CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035446.1-P	Field mustard	cytosol, peroxisome, plasma membrane	99.8	99.8
CDY44564	Canola	cytosol, peroxisome, plasma membrane	99.8	99.8
CDY49542	Canola	plasma membrane	40.43	99.51
CDY04349	Canola	cytosol, peroxisome, plasma membrane	90.53	94.83
CDY48843	Canola	cytosol, peroxisome, plasma membrane	89.35	94.57
CDY53793	Canola	cytosol, peroxisome, plasma membrane	88.76	93.95
AT1G58360.1	Thale cress	cytosol, peroxisome, plasma membrane	88.56	92.58
CDY04448	Canola	peroxisome	88.95	83.52
CDY57932	Canola	plasma membrane	69.82	76.62
CDY22609	Canola	plasma membrane	71.99	75.88
CDY53831	Canola	plasma membrane	71.4	75.26
CDY57931	Canola	plasma membrane	68.84	74.89
CDY22607	Canola	plasma membrane	70.81	74.64
CDY63746	Canola	extracellular, plasma membrane	51.87	73.88
CDY62728	Canola	plasma membrane	70.02	73.65
CDY46779	Canola	plasma membrane	68.24	72.23
CDY62727	Canola	cytosol, peroxisome, plasma membrane	65.09	70.36
CDY22608	Canola	plasma membrane	69.63	70.04
EER97947	Sorghum	golgi, peroxisome, plasma membrane	59.17	62.5
TraesCS2A01G268200.1	Wheat	plasma membrane	58.78	61.7
TraesCS2D01G256000.1	Wheat	plasma membrane	58.78	61.7
TraesCS2B01G266600.1	Wheat	plasma membrane	58.38	61.28
HORVU2Hr1G061190.4	Barley	plasma membrane	58.38	61.03
Os07t0134000-02	Rice	plasma membrane	58.38	60.78
GSMUA_Achr4P32180_001	Banana	plasma membrane	57.59	60.71
Zm00001d018751_P001	Maize	cytosol, peroxisome, plasma membrane	57.99	59.88
CDY39844	Canola	plasma membrane	51.68	56.22
CDY31348	Canola	plasma membrane	51.68	56.22
CDX87522	Canola	plasma membrane	52.66	56.09
CDX88364	Canola	plasma membrane	52.66	56.09
CDX88365	Canola	plasma membrane	52.27	55.67
CDY14972	Canola	plasma membrane	51.87	55.25
CDX81121	Canola	plasma membrane	53.06	55.24
CDY43761	Canola	plasma membrane	50.69	55.15
CDX84450	Canola	plasma membrane	50.69	55.15
CDY47793	Canola	plasma membrane	51.68	55.04
CDX78353	Canola	plasma membrane	52.86	55.03
CDX69918	Canola	plasma membrane	52.47	54.85
CDY21569	Canola	plasma membrane	52.47	54.85
CDY36017	Canola	plasma membrane	49.9	52.6
CDY60629	Canola	plasma membrane	42.41	51.81
CDY43854	Canola	plasma membrane	49.51	51.54
CDY71454	Canola	golgi, peroxisome, plasma membrane	27.81	50.36
CDY16869	Canola	plasma membrane	43.2	46.6
CDX87155	Canola	plasma membrane	31.36	45.17
CDY53832	Canola	plasma membrane	70.61	33.97

Protein Annotations

EnsemblPlants:CDY60248	EnsemblPlantsGene:GSBRNA2T00028379001	GO:A0A078J8T1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF278	PFAM:PF01490	ProteinID:CDY60248	ProteinID:CDY60248.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF160F	UniProt:A0A078J8T1	MapMan:24.2.3.4.1	:

Description

BnaC01g42990DBnaC01g42990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J8T1]

Coordinates

chrLK033859:-:3317..7039

Molecular Weight (calculated)

55901.2 Da

IEP (calculated)

8.951

GRAVY (calculated)

0.420

Length

507 amino acids

Sequence
(BLAST)

001: MKGFNTEQDH PAAESGNVYD VSDPTKNVDD DGREKRTGTW LTASAHIITA VIGSGVLSLA WAIAQLGWIA GTLILVIFSF ITYFTSTMLA DCYRAPDPVT
101: GKRNYTYMDV VRSYLGGRKV QLCGVAQYGN LIGITVGYTI TASISLVAVG KANCFHKKGH EADCTISNYP YMAVFGIIQI ILSQIPNFHK LSFLSLMAAV
201: MSFTYATIGI GLAIATVAGG KVGKTNMTGT VVGVDVTAAQ KIWRSFQAVG DIAFAYAYAT VLIEIQASFH IKYLWNLVSF EYEPLDRIVD TLKSSPAENK
301: SMKRASLVGV STTTFFYILC GCLGYAAFGN KAPGDFLTDF GFYEPFWLID FANACIAFHL IGAYQVFAQP IFQFVEKRCN RNWPDNKFIT SEYSVNVLFL
401: GKFNISLFRL VWRTAYVVIT TVVAMIFPFF NAILGLIGAA SFWPLTVYFP VEMHIAQTKV KKYSPRWIGL KMLCWVCLIV SLLAAAGSIA GLISSVKTYK
501: PFRTIHE

Best Arabidopsis Sequence Match ( AT1G58360.1 )
(BLAST)

001: MKSFNTEGHN HSTAESGDAY TVSDPTKNVD EDGREKRTGT WLTASAHIIT AVIGSGVLSL AWAIAQLGWI AGTSILLIFS FITYFTSTML ADCYRAPDPV
101: TGKRNYTYMD VVRSYLGGRK VQLCGVAQYG NLIGVTVGYT ITASISLVAV GKSNCFHDKG HTADCTISNY PYMAVFGIIQ VILSQIPNFH KLSFLSIMAA
201: VMSFTYATIG IGLAIATVAG GKVGKTSMTG TAVGVDVTAA QKIWRSFQAV GDIAFAYAYA TVLIEIQDTL RSSPAENKAM KRASLVGVST TTFFYILCGC
301: IGYAAFGNNA PGDFLTDFGF FEPFWLIDFA NACIAVHLIG AYQVFAQPIF QFVEKKCNRN YPDNKFITSE YSVNVPFLGK FNISLFRLVW RTAYVVITTV
401: VAMIFPFFNA ILGLIGAASF WPLTVYFPVE MHIAQTKIKK YSARWIALKT MCYVCLIVSL LAAAGSIAGL ISSVKTYKPF RTMHE

Arabidopsis Description

AAP1NAT2 [Source:UniProtKB/TrEMBL;Acc:A0A178WEG7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.