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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX78905
CDX98596
CDX99411
CDY01565

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G63850.1 CDX78905 AT4G19030.1 21798944
AT5G63850.1 CDX98596 AT4G19030.1 21798944
AT5G63850.1 CDX99411 AT4G19030.1 21798944
AT5G63850.1 CDY01565 AT4G19030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY39844 Canola plasma membrane 99.57 99.57
Bra029199.1-P Field mustard plasma membrane 99.36 99.36
AT5G63850.1 Thale cress plasma membrane 94.42 94.42
CDY43761 Canola plasma membrane 94.21 94.21
CDX84450 Canola plasma membrane 93.56 93.56
CDX78353 Canola plasma membrane 87.98 84.19
CDX81121 Canola plasma membrane 87.55 83.78
CDX69918 Canola plasma membrane 86.05 82.68
CDY21569 Canola plasma membrane 85.84 82.47
GSMUA_Achr10P... Banana plasma membrane 64.81 72.42
GSMUA_Achr2P20670_001 Banana plasma membrane 67.6 71.43
VIT_10s0116g01380.t01 Wine grape plasma membrane 69.1 71.08
CDX88364 Canola plasma membrane 72.53 71.01
CDX87522 Canola plasma membrane 72.32 70.8
GSMUA_Achr3P02860_001 Banana peroxisome, plasma membrane, vacuole 67.81 70.69
CDX88365 Canola plasma membrane 72.1 70.59
GSMUA_AchrUn_... Banana cytosol, plasma membrane, vacuole 62.02 69.98
TraesCS3A01G406800.1 Wheat plasma membrane 69.74 69.59
GSMUA_Achr6P12890_001 Banana peroxisome, plasma membrane, vacuole 71.89 69.07
GSMUA_Achr1P28270_001 Banana peroxisome, plasma membrane, vacuole 63.52 67.58
TraesCS3A01G406900.1 Wheat plasma membrane 69.53 67.5
Os11t0195600-01 Rice cytosol, plasma membrane, vacuole 68.88 67.44
HORVU3Hr1G091120.3 Barley plasma membrane 69.31 67.29
TraesCS3B01G441100.1 Wheat plasma membrane 69.31 67.29
TraesCS3B01G441200.1 Wheat plasma membrane 69.31 67.29
TraesCS3D01G402200.1 Wheat plasma membrane 69.53 67.22
OQU78029 Sorghum cytosol, peroxisome, plasma membrane 69.96 67.22
Zm00001d010231_P001 Maize plasma membrane 68.88 67.15
TraesCS3A01G407000.1 Wheat plasma membrane 69.1 67.08
EES03989 Sorghum plasma membrane 70.39 66.8
Zm00001d053143_P002 Maize plasma membrane 67.38 66.53
Os01t0882800-01 Rice plasma membrane 69.53 66.39
Zm00001d023593_P001 Maize plasma membrane 67.81 66.25
TraesCS5B01G116100.1 Wheat plasma membrane 68.03 66.18
TraesCS5A01G115100.1 Wheat plasma membrane 67.81 65.97
TraesCS5D01G125700.1 Wheat plasma membrane 67.81 65.97
TraesCS1D01G264700.1 Wheat golgi, peroxisome, vacuole 69.31 65.92
HORVU5Hr1G037660.1 Barley plasma membrane 67.6 65.76
Os12t0181500-01 Rice plasma membrane 66.95 65.68
HORVU1Hr1G064970.10 Barley golgi, mitochondrion, peroxisome 69.53 65.59
Zm00001d042619_P002 Maize plasma membrane 69.53 65.59
TraesCS1A01G264500.1 Wheat golgi, peroxisome, plasma membrane 69.1 65.58
Zm00001d023596_P001 Maize cytosol, peroxisome, plasma membrane 67.81 65.56
EES15765 Sorghum plasma membrane 67.38 65.55
GSMUA_Achr8P08250_001 Banana cytosol, peroxisome, plasma membrane, plastid 70.17 65.53
Os12t0181600-01 Rice plasma membrane 66.74 65.47
Zm00001d023592_P001 Maize plasma membrane 67.38 65.42
EES16764 Sorghum plasma membrane 67.6 65.35
TraesCS3D01G402300.1 Wheat plasma membrane 69.1 65.31
TraesCS4B01G100800.1 Wheat plasma membrane 68.24 65.3
TraesCS4D01G097400.1 Wheat plasma membrane 68.03 65.09
EES08162 Sorghum plasma membrane 67.17 65.07
EES16763 Sorghum plasma membrane 66.95 64.86
TraesCS4A01G215300.1 Wheat plasma membrane 67.6 64.81
EES16761 Sorghum plasma membrane 66.31 64.64
Zm00001d023603_P001 Maize plasma membrane 51.29 64.59
HORVU4Hr1G043680.3 Barley plasma membrane 67.6 64.55
Os05t0424000-01 Rice cytosol, plasma membrane, vacuole 68.45 64.31
CDY60629 Canola plasma membrane 56.65 63.61
VIT_07s0031g02340.t01 Wine grape peroxisome 76.18 63.06
CDY36017 Canola plasma membrane 65.02 62.99
HORVU3Hr1G091110.1 Barley cytosol, vacuole 15.88 62.71
CDY43854 Canola plasma membrane 65.45 62.63
Zm00001d004705_P001 Maize plasma membrane 60.52 62.11
HORVU3Hr1G091070.1 Barley cytosol 60.52 61.57
TraesCS3B01G441300.2 Wheat cytosol, peroxisome, plasma membrane, plastid 69.96 61.39
KXG23123 Sorghum mitochondrion, plastid 66.09 61.35
CDY14972 Canola plasma membrane 62.66 61.34
CDY47793 Canola plasma membrane 62.66 61.34
EES08159 Sorghum cytosol, peroxisome, plasma membrane 63.95 61.32
TraesCS5B01G120000.1 Wheat plasma membrane 61.8 61.15
HORVU3Hr1G091020.2 Barley mitochondrion 69.53 61.02
TraesCS5A01G113300.1 Wheat cytosol, peroxisome, plasma membrane 61.8 60.76
TraesCS5D01G129000.1 Wheat cytosol, peroxisome, plasma membrane 59.44 60.09
Zm00001d041842_P002 Maize mitochondrion, peroxisome, plasma membrane, plastid, vacuole 65.88 59.84
GSMUA_Achr8P32600_001 Banana plasma membrane 70.17 59.78
CDY71454 Canola golgi, peroxisome, plasma membrane 35.62 59.29
TraesCS1B01G275200.1 Wheat mitochondrion 69.31 57.68
KXG23106 Sorghum cytosol, peroxisome, plasma membrane 59.66 57.68
Zm00001d050211_P001 Maize peroxisome 54.29 55.73
HORVU2Hr1G084780.1 Barley extracellular 27.04 55.02
CDY46779 Canola plasma membrane 56.44 54.91
CDY04349 Canola cytosol, peroxisome, plasma membrane 56.65 54.55
CDY48843 Canola cytosol, peroxisome, plasma membrane 55.58 54.07
CDY53793 Canola cytosol, peroxisome, plasma membrane 55.58 54.07
EES13588 Sorghum cytosol, peroxisome, plasma membrane 57.73 54.02
TraesCS2B01G367000.1 Wheat plasma membrane 56.87 53.54
CDY57931 Canola plasma membrane 53.43 53.43
CDY22609 Canola plasma membrane 54.94 53.22
CDY53831 Canola plasma membrane 54.72 53.01
CDY63746 Canola extracellular, plasma membrane 40.34 52.81
CDY49542 Canola plasma membrane 23.18 52.43
TraesCS3A01G065600.1 Wheat plasma membrane 51.5 52.17
CDY44564 Canola cytosol, peroxisome, plasma membrane 56.44 51.87
CDY60248 Canola cytosol, peroxisome, plasma membrane 56.22 51.68
TraesCS7D01G388300.1 Wheat plasma membrane 58.37 51.61
CDY57932 Canola plasma membrane 50.86 51.3
CDY62727 Canola cytosol, peroxisome, plasma membrane 51.07 50.75
CDY62728 Canola plasma membrane 52.36 50.62
CDY22607 Canola plasma membrane 51.29 49.69
HORVU2Hr1G084710.1 Barley plasma membrane 39.7 49.6
TraesCS2D01G346500.1 Wheat plasma membrane 53.0 49.2
CDY04448 Canola peroxisome 55.79 48.15
CDY22608 Canola plasma membrane 51.93 48.02
CDY16869 Canola plasma membrane 46.57 46.17
CDX87155 Canola plasma membrane 34.55 45.74
Os12t0195100-00 Rice plastid 43.78 41.13
TraesCS2D01G347000.2 Wheat cytosol, plasma membrane, vacuole 40.56 36.49
TraesCS2A01G348600.2 Wheat cytosol, plasma membrane, vacuole 39.91 36.19
CDY53832 Canola plasma membrane 51.5 22.77
Protein Annotations
EnsemblPlants:CDY31348EnsemblPlantsGene:GSBRNA2T00047538001GO:A0A078H3D8GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:AA_transpt_TMPANTHER:PTHR22950PANTHER:PTHR22950:SF474PFAM:PF01490ProteinID:CDY31348ProteinID:CDY31348.1
SEG:segTMHMM:TMhelixUniParc:UPI0004EE2181UniProt:A0A078H3D8MapMan:24.2.3.4.1:
Description
BnaA02g33930DBnaA02g33930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3D8]
Coordinates
chrLK032270:-:362804..365199
Molecular Weight (calculated)
51189.1 Da
IEP (calculated)
9.238
GRAVY (calculated)
0.538
Length
466 amino acids
Sequence
(BLAST)
001: MDVSRPAFKC FDDDGRLKRS GTVWTASAHI ITAVIGSGVL SLAWAIGQLG WIAGPAVMFL FSFVTYFSST LLSDCYRTGD PVSGKRNYTY MDAVQSILGG
101: FRFKICGLIQ FLNLFGITVG YTIAASISMM AIKRSNCFHE SGGKNPCHMS SNPYMIMFGV TEILLSQIKD FDQIWWLSIV AAIMSFTYSA IGLALGIIQV
201: AANGVFKGSL TGISIGTVTQ TQKIWRTFQA LGDIAFAYSY SVVLIEIQDT VRSPPAESKT MKQATRISIA VTTTFYMLCG CMGYAAFGDA APGNLLTGFG
301: FYNPFWLLDV ANVAIVIHLV GAYQVFAQPI FAFVDKQAAA RFPDSDLVSK EFEIRIPGVR APYKVNVFRA VFRSCFVVLT TVISMLMPFF NDVVGILGAL
401: GFWPLTVYFP VEMYIKQRKV ERWSMKWVCL KMLSGGCLVI SVVAGVGSVA GVMLDLKVYK PFKTTY
Best Arabidopsis Sequence Match ( AT5G63850.1 )
(BLAST)
001: MDVPRPAFKC FDDDGRLKRS GTVWTASAHI ITAVIGSGVL SLAWAIGQLG WIAGPTVMLL FSFVTYYSST LLSDCYRTGD PVSGKRNYTY MDAVRSILGG
101: FRFKICGLIQ YLNLFGITVG YTIAASISMM AIKRSNCFHE SGGKNPCHMS SNPYMIMFGV TEILLSQIKD FDQIWWLSIV AAIMSFTYSA IGLALGIIQV
201: AANGVVKGSL TGISIGAVTQ TQKIWRTFQA LGDIAFAYSY SVVLIEIQDT VRSPPAESKT MKIATRISIA VTTTFYMLCG CMGYAAFGDK APGNLLTGFG
301: FYNPFWLLDV ANAAIVIHLV GAYQVFAQPI FAFIEKQAAA RFPDSDLVTK EYEIRIPGFR SPYKVNVFRA VYRSGFVVLT TVISMLMPFF NDVVGILGAL
401: GFWPLTVYFP VEMYIRQRKV ERWSMKWVCL QMLSCGCLMI TLVAGVGSIA GVMLDLKVYK PFKTTY
Arabidopsis Description
AAP4AAP4 [Source:UniProtKB/TrEMBL;Acc:A0A178UDW1]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.