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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • plasma membrane 3
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:golgi, plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d010231_P001 Maize plasma membrane 91.13 92.47
Os05t0424000-01 Rice cytosol, plasma membrane, vacuole 91.75 89.72
TraesCS1D01G264700.1 Wheat golgi, peroxisome, vacuole 88.45 87.55
TraesCS1A01G264500.1 Wheat golgi, peroxisome, plasma membrane 88.04 86.97
HORVU1Hr1G064970.10 Barley golgi, mitochondrion, peroxisome 87.84 86.23
EES03989 Sorghum plasma membrane 85.36 84.32
GSMUA_Achr2P20670_001 Banana plasma membrane 69.48 76.42
TraesCS1B01G275200.1 Wheat mitochondrion 88.04 76.25
GSMUA_Achr3P02860_001 Banana peroxisome, plasma membrane, vacuole 69.69 75.62
GSMUA_Achr10P... Banana plasma membrane 64.95 75.54
GSMUA_Achr6P12890_001 Banana peroxisome, plasma membrane, vacuole 73.61 73.61
PGSC0003DMT400030727 Potato plasma membrane 71.34 73.15
Solyc06g060110.2.1 Tomato plasma membrane 70.93 73.04
EES08162 Sorghum plasma membrane 71.96 72.56
EES16761 Sorghum plasma membrane 70.72 71.76
EES16763 Sorghum plasma membrane 70.72 71.31
Bra015673.1-P Field mustard plasma membrane 69.9 71.22
EES15765 Sorghum plasma membrane 70.31 71.19
EES16764 Sorghum plasma membrane 70.72 71.16
AT5G63850.1 Thale cress plasma membrane 68.25 71.03
CDX88364 Canola plasma membrane 69.69 71.01
VIT_18s0001g02020.t01 Wine grape cytosol, peroxisome, plasma membrane 70.31 70.89
CDX87522 Canola plasma membrane 69.48 70.8
AT1G77380.1 Thale cress plasma membrane 69.28 70.59
CDX88365 Canola plasma membrane 69.28 70.59
Bra029199.1-P Field mustard plasma membrane 67.42 70.17
PGSC0003DMT400015426 Potato plasma membrane 69.28 70.15
CDY31348 Canola plasma membrane 67.22 69.96
CDY39844 Canola plasma membrane 67.22 69.96
CDY43761 Canola plasma membrane 67.01 69.74
Bra024241.1-P Field mustard plasma membrane 66.8 69.53
Solyc11g005070.1.1 Tomato plasma membrane 68.04 69.33
VIT_10s0116g01380.t01 Wine grape plasma membrane 64.74 69.32
CDX84450 Canola plasma membrane 66.39 69.1
CDX69918 Canola plasma membrane 69.07 69.07
Bra009371.1-P Field mustard plasma membrane 68.87 68.87
CDY21569 Canola plasma membrane 68.87 68.87
KRH53283 Soybean golgi, peroxisome, plasma membrane 69.07 68.79
EES08159 Sorghum cytosol, peroxisome, plasma membrane 68.87 68.72
CDX78353 Canola plasma membrane 68.87 68.58
Bra006016.1-P Field mustard plasma membrane 68.66 68.38
CDX81121 Canola plasma membrane 68.66 68.38
KRH64623 Soybean cytosol, peroxisome, plasma membrane 68.25 67.97
PGSC0003DMT400043280 Potato plasma membrane 65.36 67.73
KXG23123 Sorghum mitochondrion, plastid 69.9 67.53
AT5G09220.1 Thale cress cytosol, peroxisome, plasma membrane 68.45 67.34
KRH17988 Soybean plasma membrane 66.39 67.22
CDY36017 Canola plasma membrane 66.39 66.94
KRH16402 Soybean plasma membrane 65.98 66.81
Bra014020.1-P Field mustard plasma membrane 65.98 66.53
CDY60629 Canola plasma membrane 56.91 66.51
AT1G44100.1 Thale cress plasma membrane 65.36 66.04
CDY43854 Canola plasma membrane 65.98 65.71
Bra032199.1-P Field mustard plasma membrane 65.98 65.71
PGSC0003DMT400008650 Potato plasma membrane 62.06 64.87
CDY47793 Canola plasma membrane 62.89 64.08
Bra036939.1-P Field mustard plasma membrane 62.89 64.08
CDY14972 Canola plasma membrane 62.89 64.08
VIT_07s0031g02340.t01 Wine grape peroxisome 72.58 62.52
CDY71454 Canola golgi, peroxisome, plasma membrane 35.46 61.43
KXG23106 Sorghum cytosol, peroxisome, plasma membrane 60.41 60.79
EES13588 Sorghum cytosol, peroxisome, plasma membrane 61.44 59.84
EER97947 Sorghum golgi, peroxisome, plasma membrane 55.88 56.46
KXG20176 Sorghum plasma membrane 52.58 55.8
EER88513 Sorghum peroxisome 55.88 55.19
OQU76565 Sorghum plasma membrane 53.81 55.06
KXG26523 Sorghum plasma membrane 49.28 51.96
KXG33808 Sorghum plasma membrane 49.9 51.49
OQU87977 Sorghum plasma membrane 48.66 50.64
EES11591 Sorghum plasma membrane 48.04 48.95
EES07345 Sorghum golgi, peroxisome, plasma membrane 47.01 48.51
EES15803 Sorghum plasma membrane 47.42 47.82
Protein Annotations
MapMan:24.2.3.4.1EntrezGene:8058470InterPro:AA_transpt_TMUniProt:C5YY71ProteinID:EES18255.1GO:GO:0003333
GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0006810
GO:GO:0008150GO:GO:0015171GO:GO:0016020GO:GO:0016021EnsemblPlants:OQU78029ProteinID:OQU78029
ProteinID:OQU78029.1ProteinID:OQU78030.1PFAM:PF01490PANTHER:PTHR22950PANTHER:PTHR22950:SF295EnsemblPlantsGene:SORBI_3009G142800
unigene:Sbi.8492TMHMM:TMhelixUniParc:UPI0001A88789RefSeq:XP_002439825.1SEG:seg:
Description
hypothetical protein
Coordinates
chr9:+:50005037..50008259
Molecular Weight (calculated)
52641.3 Da
IEP (calculated)
7.292
GRAVY (calculated)
0.557
Length
485 amino acids
Sequence
(BLAST)
001: MGEHCYPATM EESSIELGHT AASKCYDDDG RLKRTGTMWT ASAHIITAVI GSGVLSLAWA IAQLGWVAGP AVMLLFSFVT YYTSALLADC YRSGDPCTGK
101: RNYTYMDAVN ANLSGIKVQL CGFLQYANIV GVAIGYTIAA SISMLAIKRA NCFHVEGHGD PCNISSTPYM IIFGVAEIFF SQIPDFDQIS WLSILAAVMS
201: FTYSTIGLGL GIVQVVANKG VQGSLTGISV GAVTPLDKVW RSLQAFGDIA FAYSYSLILI EIQDTIRAPP PSESKVMRRA TIVSVAVTTL FYMLCGCMGY
301: AAFGDNAPGN LLTGFGFYEP FWLLDVANAA IVVHLVGAYQ VYCQPLFAFV EKWAQQRWPK SSYITGEVDV PLSLAGAAGR CYKLNLFRLT WRTAFVVATT
401: VVSMLLPFFN DVVGLLGALG FWPLTVYFPV EMYIVQKKVP RWSTLWVCLQ LLSLGCLIIT VASAAGSVAG IISDLKVYKP FVTTY
Best Arabidopsis Sequence Match ( AT1G77380.1 )
(BLAST)
001: MVQNHQTVLA VDMPQTGGSK YLDDDGKNKR TGSVWTASAH IITAVIGSGV LSLAWATAQL GWLAGPVVML LFSAVTYFTS SLLAACYRSG DPISGKRNYT
101: YMDAVRSNLG GVKVTLCGIV QYLNIFGVAI GYTIASAISM MAIKRSNCFH KSGGKDPCHM NSNPYMIAFG LVQILFSQIP DFDQLWWLSI LAAVMSFTYS
201: SAGLALGIAQ VVVNGKVKGS LTGISIGAVT ETQKIWRTFQ ALGDIAFAYS YSIILIEIQD TVKSPPSEEK TMKKATLVSV SVTTMFYMLC GCMGYAAFGD
301: LSPGNLLTGF GFYNPYWLLD IANAAIVIHL IGAYQVYCQP LFAFIEKQAS IQFPDSEFIA KDIKIPIPGF KPLRLNVFRL IWRTVFVIIT TVISMLLPFF
401: NDVVGLLGAL GFWPLTVYFP VEMYIAQKKI PRWSTRWVCL QVFSLGCLVV SIAAAAGSIA GVLLDLKSYK PFRSEY
Arabidopsis Description
AAP3ATAAP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3U1]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.