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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:
  • nucleus 1
  • golgi 2
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, peroxisome, plasma membrane
Any Predictor:nucleus, peroxisome, secretory
BaCelLo:nucleus
MultiLoc:golgi
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d018751_P001 Maize cytosol, peroxisome, plasma membrane 92.92 90.83
HORVU2Hr1G061190.4 Barley plasma membrane 85.83 84.95
TraesCS2A01G268200.1 Wheat plasma membrane 85.21 84.68
TraesCS2D01G256000.1 Wheat plasma membrane 85.21 84.68
TraesCS2B01G266600.1 Wheat plasma membrane 85.21 84.68
Os07t0134000-02 Rice plasma membrane 83.54 82.34
GSMUA_Achr4P32180_001 Banana plasma membrane 72.5 72.35
KRH62133 Soybean plasma membrane 69.79 69.94
KRH52842 Soybean plasma membrane 69.17 69.31
Bra039735.1-P Field mustard plasma membrane 66.25 67.66
Solyc04g077050.2.1 Tomato plasma membrane 67.5 67.36
PGSC0003DMT400012730 Potato plasma membrane 67.29 67.15
Solyc01g106800.2.1 Tomato plasma membrane 65.0 67.1
AT5G49630.1 Thale cress cytosol 67.08 66.94
KRH04858 Soybean plasma membrane 65.21 66.6
CDY46779 Canola plasma membrane 66.25 66.39
VIT_18s0001g08270.t01 Wine grape plasma membrane 63.54 63.15
CDY49542 Canola plasma membrane 27.08 63.11
CDY53793 Canola cytosol, peroxisome, plasma membrane 62.71 62.84
CDY48843 Canola cytosol, peroxisome, plasma membrane 62.5 62.63
AT1G58360.1 Thale cress cytosol, peroxisome, plasma membrane 63.12 62.47
Bra027868.1-P Field mustard cytosol, peroxisome, plasma membrane 62.29 62.42
CDY04349 Canola cytosol, peroxisome, plasma membrane 62.71 62.19
Solyc12g088190.1.1 Tomato plasma membrane 63.12 62.09
PGSC0003DMT400030111 Potato plasma membrane 63.12 62.09
KRH35634 Soybean plasma membrane 59.58 61.9
CDY63746 Canola extracellular, plasma membrane 45.83 61.8
AT1G10010.2 Thale cress cytosol, peroxisome, plasma membrane 61.04 61.55
CDY57932 Canola plasma membrane 57.92 60.17
CDY57931 Canola plasma membrane 57.92 59.66
Bra031697.1-P Field mustard plasma membrane 59.38 59.38
Bra019967.1-P Field mustard plasma membrane 47.29 59.27
CDY22607 Canola plasma membrane 59.38 59.25
Bra035446.1-P Field mustard cytosol, peroxisome, plasma membrane 62.5 59.17
CDY60248 Canola cytosol, peroxisome, plasma membrane 62.5 59.17
CDY44564 Canola cytosol, peroxisome, plasma membrane 62.5 59.17
Bra019969.1-P Field mustard plasma membrane 53.96 58.86
CDY22609 Canola plasma membrane 58.96 58.84
Bra031696.1-P Field mustard plasma membrane 34.79 58.8
CDY62728 Canola plasma membrane 58.96 58.71
CDY53831 Canola plasma membrane 58.75 58.63
Bra031695.1-P Field mustard plasma membrane 56.67 58.49
EES16764 Sorghum plasma membrane 57.71 57.47
EES15765 Sorghum plasma membrane 57.29 57.41
CDY62727 Canola cytosol, peroxisome, plasma membrane 55.62 56.93
EES16761 Sorghum plasma membrane 56.46 56.69
EES16763 Sorghum plasma membrane 56.46 56.34
EES08162 Sorghum plasma membrane 56.46 56.34
OQU76565 Sorghum plasma membrane 55.21 55.91
OQU78029 Sorghum cytosol, peroxisome, plasma membrane 56.46 55.88
CDY22608 Canola plasma membrane 58.54 55.75
EES03989 Sorghum plasma membrane 56.88 55.6
Bra017905.1-P Field mustard peroxisome 62.71 55.54
CDY04448 Canola peroxisome 62.29 55.37
KXG23123 Sorghum mitochondrion, plastid 57.29 54.78
KXG20176 Sorghum plasma membrane 51.88 54.49
EES08159 Sorghum cytosol, peroxisome, plasma membrane 55.0 54.32
EER88513 Sorghum peroxisome 55.21 53.97
KXG23106 Sorghum cytosol, peroxisome, plasma membrane 53.54 53.32
OQU87977 Sorghum plasma membrane 49.38 50.86
KXG33808 Sorghum plasma membrane 49.17 50.21
EES13588 Sorghum cytosol, peroxisome, plasma membrane 52.08 50.2
KXG26523 Sorghum plasma membrane 47.29 49.35
EES15803 Sorghum plasma membrane 49.38 49.27
EES11591 Sorghum plasma membrane 45.83 46.22
EES07345 Sorghum golgi, peroxisome, plasma membrane 41.88 42.77
Bra019968.1-P Field mustard endoplasmic reticulum, peroxisome, plasma membrane 41.46 38.12
CDY53832 Canola plasma membrane 59.38 27.04
Protein Annotations
MapMan:24.2.3.4.1EntrezGene:8086382InterPro:AA_transpt_TMUniProt:C5X8V1EnsemblPlants:EER97947ProteinID:EER97947
ProteinID:EER97947.1GO:GO:0003333GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0005623
GO:GO:0005886GO:GO:0006810GO:GO:0008150GO:GO:0015171GO:GO:0016020GO:GO:0016021
PFAM:PF01490PANTHER:PTHR22950PANTHER:PTHR22950:SF278EnsemblPlantsGene:SORBI_3002G027500unigene:Sbi.10336TMHMM:TMhelix
UniParc:UPI0001A84074RefSeq:XP_002461426.1SEG:seg:::
Description
hypothetical protein
Coordinates
chr2:-:2522943..2527752
Molecular Weight (calculated)
52296.5 Da
IEP (calculated)
8.577
GRAVY (calculated)
0.457
Length
480 amino acids
Sequence
(BLAST)
001: MVSERQQQQG KVAAFNLAES GFGDQADLLD DDGRERRTGT LVTASAHIIT AVIGSGVLSL AWAIAQLGWV IGPVVLLAFS AITWFCSSLL ADCYRAPDPV
101: HGKRNYTYGQ AVRAYLGVSK YRLCSLAQYI NLVGVTIGYT ITTAISMGAI NRSNCFHSKG HSADCEASNT TNMIIFAGIQ ILLSQLPNFH KLWWLSIVAA
201: VMSLAYSSIG LGLSIAKIAG GVHVKTSLTG ATVGVDVTAT EKIWKTFQSL GDIAFAYSYS NVLIEIQDTL RSSPPENVVM KKASFIGVST TTMFYMLCGV
301: LGYAAFGNDA PGNFLTGFGF YDPFWLIDVG NVCIAVHLIG AYQVFCQPIY QFVEAWARSR WPDSVFLNAE HTVAGGLFSV SPFRLVWRTA YVVVTALVAM
401: VFPFFNDFLG LIGAVSFWPL TVYFPIQMYM AQAKTRRFSP AWTWMNVLSY ACLFVSLLAA AGSVQGLVKD LKGYKPFKVS
Best Arabidopsis Sequence Match ( AT5G49630.1 )
(BLAST)
001: MEKKKSMFVE QSFPEHEIGD TNKNFDEDGR DKRTGTWMTG SAHIITAVIG SGVLSLAWAI AQLGWVAGPA VLMAFSFITY FTSTMLADCY RSPDPVTGKR
101: NYTYMEVVRS YLGGRKVQLC GLAQYGNLIG ITIGYTITAS ISMVAVKRSN CFHKNGHNVK CATSNTPFMI IFAIIQIILS QIPNFHNLSW LSILAAVMSF
201: CYASIGVGLS IAKAAGGGEH VRTTLTGVTV GIDVSGAEKI WRTFQAIGDI AFAYAYSTVL IEIQDTLKAG PPSENKAMKR ASLVGVSTTT FFYMLCGCVG
301: YAAFGNDAPG NFLTGFGFYE PFWLIDFANV CIAVHLIGAY QVFCQPIFQF VESQSAKRWP DNKFITGEYK IHVPCCGDFS INFLRLVWRT SYVVVTAVVA
401: MIFPFFNDFL GLIGAASFWP LTVYFPIEMH IAQKKIPKFS FTWTWLKILS WTCFIVSLVA AAGSVQGLIQ SLKDFKPFQA P
Arabidopsis Description
AAP6AAP6 [Source:UniProtKB/TrEMBL;Acc:A0A178UHU7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.