Factsheet for Solyc04g077050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012730	Potato	plasma membrane	97.51	97.51
AT5G49630.1	Thale cress	cytosol	77.75	77.75
Solyc12g088190.1.1	Tomato	plasma membrane	78.79	77.66
Bra039735.1-P	Field mustard	plasma membrane	75.47	77.23
KRH52842	Soybean	plasma membrane	76.72	77.04
KRH62133	Soybean	plasma membrane	76.51	76.83
VIT_18s0001g08270.t01	Wine grape	plasma membrane	76.92	76.6
CDY46779	Canola	plasma membrane	75.68	75.99
KRH04858	Soybean	plasma membrane	70.89	72.55
EER97947	Sorghum	golgi, peroxisome, plasma membrane	67.36	67.5
Solyc01g106800.2.1	Tomato	plasma membrane	64.86	67.1
TraesCS2B01G266600.1	Wheat	plasma membrane	67.15	66.87
GSMUA_Achr4P32180_001	Banana	plasma membrane	66.74	66.74
TraesCS2D01G256000.1	Wheat	plasma membrane	66.94	66.67
HORVU2Hr1G061190.4	Barley	plasma membrane	67.15	66.6
TraesCS2A01G268200.1	Wheat	plasma membrane	66.53	66.25
Os07t0134000-02	Rice	plasma membrane	66.11	65.3
Zm00001d018751_P001	Maize	cytosol, peroxisome, plasma membrane	66.53	65.17
Solyc06g060110.2.1	Tomato	plasma membrane	61.12	62.42
Solyc11g005070.1.1	Tomato	plasma membrane	58.63	59.24
Solyc07g066010.2.1	Tomato	plasma membrane	49.69	52.41
Solyc07g066020.2.1	Tomato	plasma membrane	43.66	44.68

Protein Annotations

EnsemblPlants:Solyc04g077050.2.1	EnsemblPlantsGene:Solyc04g077050.2	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0015171	GO:GO:0016020
GO:GO:0016021	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF278	PFAM:PF01490	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002766250	UniProt:K4BUE2	MapMan:24.2.3.4.1	:	:

Description

No Description!

Coordinates

chr4:+:62016870..62021539

Molecular Weight (calculated)

52583.9 Da

IEP (calculated)

8.497

GRAVY (calculated)

0.450

Length

481 amino acids

Sequence
(BLAST)

001: MAPEFQKNAM YVSNELESGD VQKNFDDDGR EKRTGTLLTA SAHIITAVIG SGVLSLAWAI AQLGWVAGPA VLLAFSFITY FTSTLLADSY RSPGPISGKR
101: NYTYMDVVRS HLGGVKVTLC GIAQYANLVG VTIGYTITAS ISMVAVRRSN CFHKNGHEAS CSIGSYPYMI IFAVIQIVLS QIPNFHKLSW LSILAAVMSF
201: TYASIGLGLS IAKVAGVGHH VKTTLTGVVV GVDVSGTEKV WRSFQAIGDI AFAYAYSTVL IEIQDTLKSS PPESKVMKRA SLAGVSTTTL FYVLCGTIGY
301: AAFGNDAPGN FLTGFGFYEP FWLIDFANVC IAVHLIGAYQ VFCQPLYGFV EARCSERWPD SKFITSEYAM QVPCCGTYNL NLFRLVWRTT YVIVTAVIAM
401: IFPFFNDFLG LIGAASFYPL TVYFPIEMHI AQRKIPKYSF TWVWLKILSW TCLIVSLVAA AGSIQGLATD VKGYKPFSTH Q

Best Arabidopsis Sequence Match ( AT5G49630.1 )
(BLAST)

001: MEKKKSMFVE QSFPEHEIGD TNKNFDEDGR DKRTGTWMTG SAHIITAVIG SGVLSLAWAI AQLGWVAGPA VLMAFSFITY FTSTMLADCY RSPDPVTGKR
101: NYTYMEVVRS YLGGRKVQLC GLAQYGNLIG ITIGYTITAS ISMVAVKRSN CFHKNGHNVK CATSNTPFMI IFAIIQIILS QIPNFHNLSW LSILAAVMSF
201: CYASIGVGLS IAKAAGGGEH VRTTLTGVTV GIDVSGAEKI WRTFQAIGDI AFAYAYSTVL IEIQDTLKAG PPSENKAMKR ASLVGVSTTT FFYMLCGCVG
301: YAAFGNDAPG NFLTGFGFYE PFWLIDFANV CIAVHLIGAY QVFCQPIFQF VESQSAKRWP DNKFITGEYK IHVPCCGDFS INFLRLVWRT SYVVVTAVVA
401: MIFPFFNDFL GLIGAASFWP LTVYFPIEMH IAQKKIPKFS FTWTWLKILS WTCFIVSLVA AAGSVQGLIQ SLKDFKPFQA P

Arabidopsis Description

AAP6AAP6 [Source:UniProtKB/TrEMBL;Acc:A0A178UHU7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.