Factsheet for Solyc12g088190.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	golgi, plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030111	Potato	plasma membrane	95.7	95.7
Solyc04g077050.2.1	Tomato	plasma membrane	77.66	78.79
Bra039735.1-P	Field mustard	plasma membrane	69.26	71.91
AT5G49630.1	Thale cress	cytosol	70.7	71.73
CDY46779	Canola	plasma membrane	69.26	70.56
VIT_18s0001g08270.t01	Wine grape	plasma membrane	69.67	70.39
KRH52842	Soybean	plasma membrane	68.65	69.94
KRH62133	Soybean	plasma membrane	68.44	69.73
KRH04858	Soybean	plasma membrane	64.34	66.81
Solyc01g106800.2.1	Tomato	plasma membrane	63.11	66.24
GSMUA_Achr4P32180_001	Banana	plasma membrane	62.3	63.2
EER97947	Sorghum	golgi, peroxisome, plasma membrane	62.09	63.12
TraesCS2A01G268200.1	Wheat	plasma membrane	61.27	61.9
TraesCS2D01G256000.1	Wheat	plasma membrane	61.27	61.9
TraesCS2B01G266600.1	Wheat	plasma membrane	60.86	61.49
HORVU2Hr1G061190.4	Barley	plasma membrane	60.86	61.24
Zm00001d018751_P001	Maize	cytosol, peroxisome, plasma membrane	61.48	61.1
Os07t0134000-02	Rice	plasma membrane	59.43	59.55
Solyc06g060110.2.1	Tomato	plasma membrane	56.97	59.02
Solyc11g005070.1.1	Tomato	plasma membrane	54.71	56.09
Solyc07g066010.2.1	Tomato	plasma membrane	47.95	51.32
Solyc07g066020.2.1	Tomato	plasma membrane	43.24	44.89

Protein Annotations

EnsemblPlants:Solyc12g088190.1.1	EnsemblPlantsGene:Solyc12g088190.1	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0015171	GO:GO:0016020
GO:GO:0016021	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF278	PFAM:PF01490	SEG:seg
TMHMM:TMhelix	UniParc:UPI000276A9C4	UniProt:K4DGP0	MapMan:24.2.3.4.1	:	:

Description

No Description!

Coordinates

chr12:+:63632109..63638837

Molecular Weight (calculated)

54254.4 Da

IEP (calculated)

8.739

GRAVY (calculated)

0.403

Length

488 amino acids

Sequence
(BLAST)

001: MASEFEKNST NMYVEQSPKG LENGQVQRNI DDDGREKRTG TVLTASAHII TAVIGSGVLS LAWAMAQLGW VAGPVILFLF SFITYFTSTL LTDCYRFPGP
101: DSGKRNYSYM EVVRSHLGGF KVQLCGIAQY GNLVGITIGY TITASISMKA VVRSNCFHKE GHQASCIVSN YPYMVIFAII QIILSQIQNF HKLSWLSMLA
201: AVMSFAYSLI GLGLSIAKVA GVGHHVKTSL TGTIVGVDVS ASQKVWRCLQ SIGDIAFAYA FATILIDIQD TLRSPPPENK AMKRASLVGV FTTTLFYVLC
301: GTIGYAAFGN NAPGNFLTGF GFYEPFWLID FANVCIAIHL IGAYQVFCQP IYSFVEGRCI EKWPENKFIK SQHDINIPWL GVYNLSYFRM IWRTIYVIVT
401: AIIAMIFPFF NAILGLIGAA SFYPLTVYFP IEMHIAQRKI PKYSFKWIWL HILSWACLVV SLVAAAGSIE GLIQDLKTYK PFKPQDHD

Best Arabidopsis Sequence Match ( AT5G49630.1 )
(BLAST)

001: MEKKKSMFVE QSFPEHEIGD TNKNFDEDGR DKRTGTWMTG SAHIITAVIG SGVLSLAWAI AQLGWVAGPA VLMAFSFITY FTSTMLADCY RSPDPVTGKR
101: NYTYMEVVRS YLGGRKVQLC GLAQYGNLIG ITIGYTITAS ISMVAVKRSN CFHKNGHNVK CATSNTPFMI IFAIIQIILS QIPNFHNLSW LSILAAVMSF
201: CYASIGVGLS IAKAAGGGEH VRTTLTGVTV GIDVSGAEKI WRTFQAIGDI AFAYAYSTVL IEIQDTLKAG PPSENKAMKR ASLVGVSTTT FFYMLCGCVG
301: YAAFGNDAPG NFLTGFGFYE PFWLIDFANV CIAVHLIGAY QVFCQPIFQF VESQSAKRWP DNKFITGEYK IHVPCCGDFS INFLRLVWRT SYVVVTAVVA
401: MIFPFFNDFL GLIGAASFWP LTVYFPIEMH IAQKKIPKFS FTWTWLKILS WTCFIVSLVA AAGSVQGLIQ SLKDFKPFQA P

Arabidopsis Description

AAP6AAP6 [Source:UniProtKB/TrEMBL;Acc:A0A178UHU7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.