CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
peroxisome 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017905.1-P	Field mustard	peroxisome	98.52	98.16
CDY04349	Canola	cytosol, peroxisome, plasma membrane	86.67	96.69
CDY49542	Canola	plasma membrane	36.67	96.12
CDY48843	Canola	cytosol, peroxisome, plasma membrane	81.11	91.44
CDY53793	Canola	cytosol, peroxisome, plasma membrane	80.56	90.81
AT1G58360.1	Thale cress	cytosol, peroxisome, plasma membrane	80.37	89.48
CDY60248	Canola	cytosol, peroxisome, plasma membrane	83.52	88.95
CDY44564	Canola	cytosol, peroxisome, plasma membrane	83.52	88.95
CDY57932	Canola	plasma membrane	65.74	76.84
CDY22609	Canola	plasma membrane	67.04	75.26
CDY53831	Canola	plasma membrane	66.67	74.84
CDY62728	Canola	plasma membrane	66.11	74.07
CDY63746	Canola	extracellular, plasma membrane	48.7	73.88
CDY57931	Canola	plasma membrane	63.7	73.82
CDY22607	Canola	plasma membrane	65.56	73.6
CDY46779	Canola	plasma membrane	62.22	70.15
CDY62727	Canola	cytosol, peroxisome, plasma membrane	60.56	69.72
CDY22608	Canola	plasma membrane	64.81	69.44
EER97947	Sorghum	golgi, peroxisome, plasma membrane	55.37	62.29
TraesCS2D01G256000.1	Wheat	plasma membrane	54.81	61.28
TraesCS2A01G268200.1	Wheat	plasma membrane	54.81	61.28
TraesCS2B01G266600.1	Wheat	plasma membrane	54.44	60.87
HORVU2Hr1G061190.4	Barley	plasma membrane	54.44	60.62
Os07t0134000-02	Rice	plasma membrane	54.63	60.57
GSMUA_Achr4P32180_001	Banana	plasma membrane	53.15	59.67
Zm00001d018751_P001	Maize	cytosol, peroxisome, plasma membrane	53.52	58.86
CDX88364	Canola	plasma membrane	49.63	56.3
CDX87522	Canola	plasma membrane	49.44	56.09
CDX88365	Canola	plasma membrane	49.26	55.88
CDY31348	Canola	plasma membrane	48.15	55.79
CDY39844	Canola	plasma membrane	48.15	55.79
CDX81121	Canola	plasma membrane	49.44	54.83
CDY14972	Canola	plasma membrane	48.15	54.62
CDX78353	Canola	plasma membrane	49.26	54.62
CDX84450	Canola	plasma membrane	47.04	54.51
CDY43761	Canola	plasma membrane	47.04	54.51
CDX69918	Canola	plasma membrane	48.89	54.43
CDY21569	Canola	plasma membrane	48.89	54.43
CDY47793	Canola	plasma membrane	47.96	54.41
CDY36017	Canola	plasma membrane	46.85	52.6
CDY60629	Canola	plasma membrane	40.0	52.05
CDY43854	Canola	plasma membrane	46.3	51.33
CDY71454	Canola	golgi, peroxisome, plasma membrane	26.11	50.36
CDY16869	Canola	plasma membrane	40.74	46.81
CDX87155	Canola	plasma membrane	29.63	45.45
CDY53832	Canola	plasma membrane	65.74	33.68

Protein Annotations

EnsemblPlants:CDY04448	EnsemblPlantsGene:GSBRNA2T00118587001	GO:A0A078EXX6	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF278	PFAM:PF01490	ProteinID:CDY04448	ProteinID:CDY04448.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF142A	MapMan:24.2.3.4.1	:	:

Description

BnaA03g59400D

Coordinates

chrLK031954:-:870351..876525

Molecular Weight (calculated)

59755.6 Da

IEP (calculated)

6.637

GRAVY (calculated)

0.375

Length

540 amino acids

Sequence
(BLAST)

001: MKSFNTEHEH PAAESGDIYA ESNPTKNMDD DGREKRTGTC LTASAHIITA VIGYGVLSLS WAIAQLGWIA GLLILVIFSF ITYLTSTMLA DCYRAPDPVT
101: GKRNYTYMDV VRAYLGGRKV QLCGVAQYGN LIGITVGYTI TASISLVAIG KANCFHDKGH HADCTLSSYP YMAAFGIIQI ILSQIPNFHK LSFLSIMAAV
201: MSFTYATIGI GLAMATVAGG KVRKTNMTGT VVGVDVTATQ KIWRSFQAVG DIAFAYAYAT VLIEIQDTLK SSPAENKSMK RASLVGVSTT TFFYILCGCF
301: GYAAFGNKAP GDFLTDFGFY EPFWLIDFAN ACIAFHLIGA YQVFAQPIFQ FVEKRCNRNW PDNKFITYEY SVNIHFLGKF NISIFRLVWR TAYVVITTVV
401: AMIFPFFNAI LGLIGAASFW PLTVYFPVEM HIAQTKVKKY SPRWIGLKVM CWVCLIVSLL AAAGSIAGLI SSVKTYKPFR TIHDVQVEHP NLTKVETELE
501: LVADVEIELE LGADLEVVTE LEAEMVVQFW QEFEIGEFAE

Best Arabidopsis Sequence Match ( AT5G49630.1 )
(BLAST)

001: MEKKKSMFVE QSFPEHEIGD TNKNFDEDGR DKRTGTWMTG SAHIITAVIG SGVLSLAWAI AQLGWVAGPA VLMAFSFITY FTSTMLADCY RSPDPVTGKR
101: NYTYMEVVRS YLGGRKVQLC GLAQYGNLIG ITIGYTITAS ISMVAVKRSN CFHKNGHNVK CATSNTPFMI IFAIIQIILS QIPNFHNLSW LSILAAVMSF
201: CYASIGVGLS IAKAAGGGEH VRTTLTGVTV GIDVSGAEKI WRTFQAIGDI AFAYAYSTVL IEIQDTLKAG PPSENKAMKR ASLVGVSTTT FFYMLCGCVG
301: YAAFGNDAPG NFLTGFGFYE PFWLIDFANV CIAVHLIGAY QVFCQPIFQF VESQSAKRWP DNKFITGEYK IHVPCCGDFS INFLRLVWRT SYVVVTAVVA
401: MIFPFFNDFL GLIGAASFWP LTVYFPIEMH IAQKKIPKFS FTWTWLKILS WTCFIVSLVA AAGSVQGLIQ SLKDFKPFQA P

Arabidopsis Description

AAP6AAP6 [Source:UniProtKB/TrEMBL;Acc:A0A178UHU7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.