CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, peroxisome

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49542	Canola	plasma membrane	41.53	97.57
CDY48843	Canola	cytosol, peroxisome, plasma membrane	91.94	92.9
CDY53793	Canola	cytosol, peroxisome, plasma membrane	91.32	92.28
CDY44564	Canola	cytosol, peroxisome, plasma membrane	95.04	90.73
AT1G58360.1	Thale cress	cytosol, peroxisome, plasma membrane	90.91	90.72
CDY60248	Canola	cytosol, peroxisome, plasma membrane	94.83	90.53
CDY04448	Canola	peroxisome	96.69	86.67
CDY57932	Canola	plasma membrane	73.35	76.84
CDY22609	Canola	plasma membrane	75.21	75.68
CDY53831	Canola	plasma membrane	74.79	75.26
CDY22607	Canola	plasma membrane	74.17	74.64
CDY57931	Canola	plasma membrane	71.69	74.46
CDY62728	Canola	plasma membrane	73.97	74.27
CDY63746	Canola	extracellular, plasma membrane	54.55	74.16
CDY46779	Canola	plasma membrane	70.45	71.19
CDY62727	Canola	cytosol, peroxisome, plasma membrane	68.18	70.36
CDY22608	Canola	plasma membrane	72.73	69.84
EER97947	Sorghum	golgi, peroxisome, plasma membrane	62.19	62.71
TraesCS2D01G256000.1	Wheat	plasma membrane	61.78	61.9
TraesCS2A01G268200.1	Wheat	plasma membrane	61.78	61.9
TraesCS2B01G266600.1	Wheat	plasma membrane	61.36	61.49
HORVU2Hr1G061190.4	Barley	plasma membrane	61.36	61.24
Os07t0134000-02	Rice	plasma membrane	61.57	61.19
GSMUA_Achr4P32180_001	Banana	plasma membrane	59.92	60.29
Zm00001d018751_P001	Maize	cytosol, peroxisome, plasma membrane	60.54	59.67
CDX88364	Canola	plasma membrane	55.79	56.72
CDY39844	Canola	plasma membrane	54.55	56.65
CDY31348	Canola	plasma membrane	54.55	56.65
CDX87522	Canola	plasma membrane	55.58	56.51
CDX88365	Canola	plasma membrane	55.37	56.3
CDX81121	Canola	plasma membrane	55.79	55.44
CDY43761	Canola	plasma membrane	53.31	55.36
CDX84450	Canola	plasma membrane	53.31	55.36
CDX69918	Canola	plasma membrane	55.37	55.26
CDY21569	Canola	plasma membrane	55.37	55.26
CDX78353	Canola	plasma membrane	55.58	55.24
CDY14972	Canola	plasma membrane	54.13	55.04
CDY47793	Canola	plasma membrane	53.93	54.83
CDY36017	Canola	plasma membrane	52.69	53.01
CDY60629	Canola	plasma membrane	45.04	52.53
CDY43854	Canola	plasma membrane	52.27	51.95
CDY71454	Canola	golgi, peroxisome, plasma membrane	29.55	51.07
CDY16869	Canola	plasma membrane	45.66	47.02
CDX87155	Canola	plasma membrane	33.06	45.45
CDY53832	Canola	plasma membrane	73.97	33.97

Protein Annotations

EnsemblPlants:CDY04349	EnsemblPlantsGene:GSBRNA2T00118235001	GO:A0A078EUT3	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF278	PFAM:PF01490	ProteinID:CDY04349	ProteinID:CDY04349.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDB820	MapMan:24.2.3.4.1	:	:

Description

BnaC04g18440D

Coordinates

chrLK031952:-:246915..256213

Molecular Weight (calculated)

53142.7 Da

IEP (calculated)

8.976

GRAVY (calculated)

0.420

Length

484 amino acids

Sequence
(BLAST)

001: MKSFNTEHEH PAAESGDVFA ESNPTKNVDD DGREKRTGTW LTASAHIITA VIGSGVLSLS WAIAQLGWIA GLLILVIFSF ITYFTSTMLA DCYRAPDPVT
101: GKRNYTYMDV VRSYLGGRKV QLCGVAQYGN LIGITVGYTI TASISLVAIG KANCFHDKGH HADCTFSSYP YMAAFGIIQI ILSQIPNFHK LSFLSIMAAV
201: MSFTYATIGI GLAMATVAGG KVGKTNMTGT VVGVDVTATQ KIWRSFQAVG DIAFAYAYAT VLIEIQDTLK SSPAENKSMK RASLLGVSTT TFFYILCGCF
301: GYAAFGNKAP GDFLTDFGFY EPFWLIDFAN ACIAFHLIGA YQVFAQPIFQ FVEKRCNRNW PDNKFITSEY SVNVPFLGKF NISIFRLVWR TAYVVITTVV
401: AMIFPFFNAI LGLIGAASFW PLTVYFPVEM NIAQTKVKKY SPRWIGLKVL CWVCLIVSLL AAAGSIAGLI SSVKTYKPFR TIHE

Best Arabidopsis Sequence Match ( AT1G58360.1 )
(BLAST)

001: MKSFNTEGHN HSTAESGDAY TVSDPTKNVD EDGREKRTGT WLTASAHIIT AVIGSGVLSL AWAIAQLGWI AGTSILLIFS FITYFTSTML ADCYRAPDPV
101: TGKRNYTYMD VVRSYLGGRK VQLCGVAQYG NLIGVTVGYT ITASISLVAV GKSNCFHDKG HTADCTISNY PYMAVFGIIQ VILSQIPNFH KLSFLSIMAA
201: VMSFTYATIG IGLAIATVAG GKVGKTSMTG TAVGVDVTAA QKIWRSFQAV GDIAFAYAYA TVLIEIQDTL RSSPAENKAM KRASLVGVST TTFFYILCGC
301: IGYAAFGNNA PGDFLTDFGF FEPFWLIDFA NACIAVHLIG AYQVFAQPIF QFVEKKCNRN YPDNKFITSE YSVNVPFLGK FNISLFRLVW RTAYVVITTV
401: VAMIFPFFNA ILGLIGAASF WPLTVYFPVE MHIAQTKIKK YSARWIALKT MCYVCLIVSL LAAAGSIAGL ISSVKTYKPF RTMHE

Arabidopsis Description

AAP1NAT2 [Source:UniProtKB/TrEMBL;Acc:A0A178WEG7]
SUBAcon: [cytosol,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.