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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • extracellular 1
  • golgi 1
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX78905
CDX98596
CDX99411
CDY01565

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G63850.1 CDX78905 AT4G19030.1 21798944
AT5G63850.1 CDX98596 AT4G19030.1 21798944
AT5G63850.1 CDX99411 AT4G19030.1 21798944
AT5G63850.1 CDY01565 AT4G19030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY43761 Canola plasma membrane 98.93 98.93
CDY31348 Canola plasma membrane 93.56 93.56
CDY39844 Canola plasma membrane 93.56 93.56
AT5G63850.1 Thale cress plasma membrane 92.06 92.06
CDX78353 Canola plasma membrane 84.76 81.11
CDX69918 Canola plasma membrane 84.12 80.82
CDX81121 Canola plasma membrane 84.33 80.7
CDY21569 Canola plasma membrane 83.91 80.62
GSMUA_Achr10P... Banana plasma membrane 63.52 70.98
CDX87522 Canola plasma membrane 71.89 70.38
CDX88364 Canola plasma membrane 71.89 70.38
GSMUA_Achr3P02860_001 Banana peroxisome, plasma membrane, vacuole 67.38 70.25
CDX88365 Canola plasma membrane 71.46 69.96
GSMUA_Achr2P20670_001 Banana plasma membrane 65.67 69.39
VIT_10s0116g01380.t01 Wine grape plasma membrane 67.38 69.32
GSMUA_AchrUn_... Banana cytosol, plasma membrane, vacuole 60.73 68.52
GSMUA_Achr6P12890_001 Banana peroxisome, plasma membrane, vacuole 71.03 68.25
TraesCS3A01G406800.1 Wheat plasma membrane 68.24 68.09
OQU78029 Sorghum cytosol, peroxisome, plasma membrane 69.1 66.39
GSMUA_Achr1P28270_001 Banana peroxisome, plasma membrane, vacuole 62.23 66.21
Zm00001d010231_P001 Maize plasma membrane 67.81 66.11
TraesCS3A01G406900.1 Wheat plasma membrane 68.03 66.04
HORVU3Hr1G091120.3 Barley plasma membrane 67.81 65.83
EES03989 Sorghum plasma membrane 69.31 65.78
Os01t0882800-01 Rice plasma membrane 68.88 65.78
TraesCS3D01G402200.1 Wheat plasma membrane 68.03 65.77
Os11t0195600-01 Rice cytosol, plasma membrane, vacuole 67.17 65.76
Zm00001d053143_P002 Maize plasma membrane 66.52 65.68
Zm00001d023593_P001 Maize plasma membrane 67.17 65.62
TraesCS3B01G441100.1 Wheat plasma membrane 67.38 65.42
TraesCS3B01G441200.1 Wheat plasma membrane 67.38 65.42
EES16764 Sorghum plasma membrane 67.6 65.35
Zm00001d023596_P001 Maize cytosol, peroxisome, plasma membrane 67.6 65.35
EES15765 Sorghum plasma membrane 67.17 65.34
TraesCS3A01G407000.1 Wheat plasma membrane 67.17 65.21
Zm00001d023592_P001 Maize plasma membrane 66.95 65.0
TraesCS5B01G116100.1 Wheat plasma membrane 66.74 64.93
TraesCS1D01G264700.1 Wheat golgi, peroxisome, vacuole 68.24 64.9
EES16763 Sorghum plasma membrane 66.95 64.86
TraesCS1A01G264500.1 Wheat golgi, peroxisome, plasma membrane 68.24 64.77
TraesCS5A01G115100.1 Wheat plasma membrane 66.52 64.72
TraesCS5D01G125700.1 Wheat plasma membrane 66.52 64.72
EES16761 Sorghum plasma membrane 66.31 64.64
HORVU1Hr1G064970.10 Barley golgi, mitochondrion, peroxisome 68.45 64.57
Zm00001d042619_P002 Maize plasma membrane 68.45 64.57
HORVU5Hr1G037660.1 Barley plasma membrane 66.31 64.51
Zm00001d023603_P001 Maize plasma membrane 51.07 64.32
TraesCS4B01G100800.1 Wheat plasma membrane 67.17 64.27
Os12t0181500-01 Rice plasma membrane 65.45 64.21
TraesCS4A01G215300.1 Wheat plasma membrane 66.95 64.2
HORVU4Hr1G043680.3 Barley plasma membrane 67.17 64.14
TraesCS4D01G097400.1 Wheat plasma membrane 66.95 64.07
EES08162 Sorghum plasma membrane 66.09 64.03
Os12t0181600-01 Rice plasma membrane 65.24 64.0
TraesCS3D01G402300.1 Wheat plasma membrane 67.6 63.89
GSMUA_Achr8P08250_001 Banana cytosol, peroxisome, plasma membrane, plastid 68.24 63.73
CDY60629 Canola plasma membrane 56.65 63.61
Os05t0424000-01 Rice cytosol, plasma membrane, vacuole 67.6 63.51
CDY43854 Canola plasma membrane 65.24 62.42
CDY36017 Canola plasma membrane 64.38 62.37
CDY47793 Canola plasma membrane 62.66 61.34
VIT_07s0031g02340.t01 Wine grape peroxisome 74.03 61.28
KXG23123 Sorghum mitochondrion, plastid 65.88 61.16
HORVU3Hr1G091110.1 Barley cytosol, vacuole 15.45 61.02
CDY14972 Canola plasma membrane 62.23 60.92
Zm00001d004705_P001 Maize plasma membrane 59.01 60.57
TraesCS5B01G120000.1 Wheat plasma membrane 61.16 60.51
EES08159 Sorghum cytosol, peroxisome, plasma membrane 63.09 60.49
TraesCS5A01G113300.1 Wheat cytosol, peroxisome, plasma membrane 61.37 60.34
HORVU3Hr1G091070.1 Barley cytosol 59.23 60.26
TraesCS3B01G441300.2 Wheat cytosol, peroxisome, plasma membrane, plastid 68.24 59.89
HORVU3Hr1G091020.2 Barley mitochondrion 68.03 59.7
Zm00001d041842_P002 Maize mitochondrion, peroxisome, plasma membrane, plastid, vacuole 65.67 59.65
TraesCS5D01G129000.1 Wheat cytosol, peroxisome, plasma membrane 58.58 59.22
GSMUA_Achr8P32600_001 Banana plasma membrane 68.88 58.68
CDY71454 Canola golgi, peroxisome, plasma membrane 35.19 58.57
TraesCS1B01G275200.1 Wheat mitochondrion 68.24 56.79
KXG23106 Sorghum cytosol, peroxisome, plasma membrane 58.58 56.64
Zm00001d050211_P001 Maize peroxisome 54.29 55.73
HORVU2Hr1G084780.1 Barley extracellular 27.25 55.46
CDY46779 Canola plasma membrane 55.58 54.07
EES13588 Sorghum cytosol, peroxisome, plasma membrane 57.3 53.61
CDY57931 Canola plasma membrane 53.43 53.43
CDY63746 Canola extracellular, plasma membrane 40.77 53.37
CDY04349 Canola cytosol, peroxisome, plasma membrane 55.36 53.31
TraesCS2B01G367000.1 Wheat plasma membrane 56.44 53.13
CDY22609 Canola plasma membrane 54.51 52.81
CDY48843 Canola cytosol, peroxisome, plasma membrane 54.08 52.61
CDY53793 Canola cytosol, peroxisome, plasma membrane 54.08 52.61
TraesCS3A01G065600.1 Wheat plasma membrane 51.72 52.39
CDY53831 Canola plasma membrane 53.86 52.18
CDY57932 Canola plasma membrane 51.5 51.95
CDY49542 Canola plasma membrane 22.96 51.94
CDY62728 Canola plasma membrane 53.0 51.24
CDY44564 Canola cytosol, peroxisome, plasma membrane 55.36 50.89
CDY60248 Canola cytosol, peroxisome, plasma membrane 55.15 50.69
TraesCS7D01G388300.1 Wheat plasma membrane 56.87 50.28
CDY22607 Canola plasma membrane 51.72 50.1
CDY62727 Canola cytosol, peroxisome, plasma membrane 50.21 49.89
TraesCS2D01G346500.1 Wheat plasma membrane 53.43 49.6
HORVU2Hr1G084710.1 Barley plasma membrane 39.7 49.6
CDY22608 Canola plasma membrane 52.36 48.41
CDY04448 Canola peroxisome 54.51 47.04
CDY16869 Canola plasma membrane 46.78 46.38
CDX87155 Canola plasma membrane 34.98 46.31
Os12t0195100-00 Rice plastid 43.13 40.52
TraesCS2D01G347000.2 Wheat cytosol, plasma membrane, vacuole 39.27 35.33
TraesCS2A01G348600.2 Wheat cytosol, plasma membrane, vacuole 38.84 35.21
CDY53832 Canola plasma membrane 51.72 22.87
Protein Annotations
EnsemblPlants:CDX84450EnsemblPlantsGene:GSBRNA2T00141657001GO:A0A078D5N8InterPro:AA_transpt_TMPANTHER:PTHR22950PANTHER:PTHR22950:SF474
PFAM:PF01490ProteinID:CDX84450ProteinID:CDX84450.1SEG:segTMHMM:TMhelixUniParc:UPI0004EEA468
MapMan:24.2.3.4.1:::::
Description
BnaC03g50500D
Coordinates
chrLK031837:+:1226708..1229420
Molecular Weight (calculated)
51371.2 Da
IEP (calculated)
9.244
GRAVY (calculated)
0.507
Length
466 amino acids
Sequence
(BLAST)
001: MDVPRPAFKC FDDDGRPKRS GTVWTASAHI LTAVIGSGVL SLAWAIGQLG WIAGPAVMFL FSFVTYYSTT LLSDCYRTGD PVSGKRNYTY MDAVQSILGG
101: FRFKICGLMQ FLNLFGTTIG YTIASSISMM AIKRSNCFHE SGGKNLCHMS SNPYMIMFGV IEILLSTIKD FHQIWWLSTV AAIMSFTYSS IGLALGIIQV
201: AANGVFKGSL TGISIGAVTQ TQKIWRTFQA LGDIAFAYSY SVVLIEIQDT VRSPPAESKT MKNATRISIA VTTTFYMLCG CMGYAAFGDA APGNLLTGFG
301: FYNPFWLLDV ANAAIVVHLV GAYQVFAQPI FAFVEKQAAA RFPNSDLVSK EFEIRFPGVR SPYKVNVFRT VFRSCFVVLT TVISMLMPFF NDVVGILGAL
401: AFWPLTVYFP VEMYIKQRKV ERWSMKWVCL QMLSCGCLVV TVVAGVGSVV GVMLDLKVYK PFKTTY
Best Arabidopsis Sequence Match ( AT5G63850.1 )
(BLAST)
001: MDVPRPAFKC FDDDGRLKRS GTVWTASAHI ITAVIGSGVL SLAWAIGQLG WIAGPTVMLL FSFVTYYSST LLSDCYRTGD PVSGKRNYTY MDAVRSILGG
101: FRFKICGLIQ YLNLFGITVG YTIAASISMM AIKRSNCFHE SGGKNPCHMS SNPYMIMFGV TEILLSQIKD FDQIWWLSIV AAIMSFTYSA IGLALGIIQV
201: AANGVVKGSL TGISIGAVTQ TQKIWRTFQA LGDIAFAYSY SVVLIEIQDT VRSPPAESKT MKIATRISIA VTTTFYMLCG CMGYAAFGDK APGNLLTGFG
301: FYNPFWLLDV ANAAIVIHLV GAYQVFAQPI FAFIEKQAAA RFPDSDLVTK EYEIRIPGFR SPYKVNVFRA VYRSGFVVLT TVISMLMPFF NDVVGILGAL
401: GFWPLTVYFP VEMYIRQRKV ERWSMKWVCL QMLSCGCLMI TLVAGVGSIA GVMLDLKVYK PFKTTY
Arabidopsis Description
AAP4AAP4 [Source:UniProtKB/TrEMBL;Acc:A0A178UDW1]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.