CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48843	Canola	cytosol, peroxisome, plasma membrane	99.37	99.37
Bra027868.1-P	Field mustard	cytosol, peroxisome, plasma membrane	98.96	98.96
CDY49542	Canola	plasma membrane	41.54	96.6
CDY04349	Canola	cytosol, peroxisome, plasma membrane	92.28	91.32
AT1G58360.1	Thale cress	cytosol, peroxisome, plasma membrane	91.02	89.9
CDY44564	Canola	cytosol, peroxisome, plasma membrane	94.15	88.95
CDY60248	Canola	cytosol, peroxisome, plasma membrane	93.95	88.76
CDY04448	Canola	peroxisome	90.81	80.56
CDY57932	Canola	plasma membrane	73.28	75.97
CDY57931	Canola	plasma membrane	73.9	75.97
CDY22609	Canola	plasma membrane	75.78	75.47
CDY53831	Canola	plasma membrane	75.16	74.84
CDY63746	Canola	extracellular, plasma membrane	55.32	74.44
CDY22607	Canola	plasma membrane	74.11	73.8
CDY62728	Canola	plasma membrane	73.7	73.24
CDY62727	Canola	cytosol, peroxisome, plasma membrane	69.73	71.22
CDY46779	Canola	plasma membrane	70.98	70.98
CDY22608	Canola	plasma membrane	73.28	69.64
EER97947	Sorghum	golgi, peroxisome, plasma membrane	62.84	62.71
TraesCS2A01G268200.1	Wheat	plasma membrane	60.96	60.46
TraesCS2D01G256000.1	Wheat	plasma membrane	60.96	60.46
GSMUA_Achr4P32180_001	Banana	plasma membrane	60.54	60.29
TraesCS2B01G266600.1	Wheat	plasma membrane	60.54	60.04
HORVU2Hr1G061190.4	Barley	plasma membrane	60.54	59.79
Os07t0134000-02	Rice	plasma membrane	60.75	59.75
Zm00001d018751_P001	Maize	cytosol, peroxisome, plasma membrane	61.17	59.67
CDY39844	Canola	plasma membrane	54.07	55.58
CDY31348	Canola	plasma membrane	54.07	55.58
CDX87522	Canola	plasma membrane	54.7	55.04
CDX88364	Canola	plasma membrane	54.7	55.04
CDY14972	Canola	plasma membrane	54.7	55.04
CDY47793	Canola	plasma membrane	54.49	54.83
CDX88365	Canola	plasma membrane	54.28	54.62
CDX81121	Canola	plasma membrane	55.32	54.41
CDX78353	Canola	plasma membrane	55.11	54.21
CDY43761	Canola	plasma membrane	52.61	54.08
CDX84450	Canola	plasma membrane	52.61	54.08
CDX69918	Canola	plasma membrane	54.49	53.81
CDY21569	Canola	plasma membrane	54.49	53.81
CDY36017	Canola	plasma membrane	51.98	51.77
CDY43854	Canola	plasma membrane	51.77	50.92
CDY60629	Canola	plasma membrane	44.05	50.84
CDY71454	Canola	golgi, peroxisome, plasma membrane	28.6	48.93
CDY16869	Canola	plasma membrane	46.14	47.02
CDX87155	Canola	plasma membrane	33.61	45.74
CDY53832	Canola	plasma membrane	74.32	33.78

Protein Annotations

EnsemblPlants:CDY53793	EnsemblPlantsGene:GSBRNA2T00011464001	GO:A0A078IXP0	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF278	PFAM:PF01490	ProteinID:CDY53793	ProteinID:CDY53793.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDCAE9	UniProt:A0A078IXP0	MapMan:24.2.3.4.1	:

Description

BnaCnng25620DBnaCnng25620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXP0]

Coordinates

chrLK033238:+:35962..40214

Molecular Weight (calculated)

52470.9 Da

IEP (calculated)

9.269

GRAVY (calculated)

0.412

Length

479 amino acids

Sequence
(BLAST)

001: MKSFNTDQHG HSAAESADVY AMSDPTKNVD DDGREKRTGT WLTASAHIIT AVIGSGVLSL AWAIAQLGWI AGTLILIIFS FITYFTSTML ADCYRAPDPL
101: TGKRNYTYMD VVRSYLGGRK VQLCGVAQYG NLIGITVGYT ITASISLVAI GKANCYHNKG HHADCTISNY PYMAAFGIIQ ILLSQIPNFH KLSFLSLMAA
201: VMSFAYASIG IGLAIATVAG GKVGKTNMTG TVVGVDVTAA QKIWRSFQAV GDIAFAYAYA TDTLRSSPAE NKAMKRASFV GVSTTTFFYI LCGCLGYAAF
301: GNKAPGDFLT DFGFYEPFWL IDFANACIAF HLIGAYQVFA QPIFQFVEKK CNRNWPDNKF ITSEYSVNIP FLGKFSINLF RLVWRTAYVV ITTLVAMIFP
401: FFNAILGLIG AASFWPLTVY FPVEMHIAQT KVKKYSSRWI GLKMLCWVCL IVSLLAAAGS IAGLISSVKT YKPFRTIHE

Best Arabidopsis Sequence Match ( AT1G58360.1 )
(BLAST)

001: MKSFNTEGHN HSTAESGDAY TVSDPTKNVD EDGREKRTGT WLTASAHIIT AVIGSGVLSL AWAIAQLGWI AGTSILLIFS FITYFTSTML ADCYRAPDPV
101: TGKRNYTYMD VVRSYLGGRK VQLCGVAQYG NLIGVTVGYT ITASISLVAV GKSNCFHDKG HTADCTISNY PYMAVFGIIQ VILSQIPNFH KLSFLSIMAA
201: VMSFTYATIG IGLAIATVAG GKVGKTSMTG TAVGVDVTAA QKIWRSFQAV GDIAFAYAYA TVLIEIQDTL RSSPAENKAM KRASLVGVST TTFFYILCGC
301: IGYAAFGNNA PGDFLTDFGF FEPFWLIDFA NACIAVHLIG AYQVFAQPIF QFVEKKCNRN YPDNKFITSE YSVNVPFLGK FNISLFRLVW RTAYVVITTV
401: VAMIFPFFNA ILGLIGAASF WPLTVYFPVE MHIAQTKIKK YSARWIALKT MCYVCLIVSL LAAAGSIAGL ISSVKTYKPF RTMHE

Arabidopsis Description

AAP1NAT2 [Source:UniProtKB/TrEMBL;Acc:A0A178WEG7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.