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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 1
  • extracellular 5
  • golgi 4
  • plasma membrane 6
  • endoplasmic reticulum 4
  • vacuole 4
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:plasma membrane
Plant-mPloc:plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:plasma membrane
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G01430.1 Solyc06g074170.2.1 AT5G22290.1 21798944
AT4G01430.1 Solyc11g068750.1.1 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400015286 Potato plasma membrane 84.44 79.62
VIT_01s0010g03480.t01 Wine grape plasma membrane 58.21 55.8
KRG90631 Soybean plasma membrane 55.04 55.2
KRH36123 Soybean endoplasmic reticulum, plasma membrane, vacuole 54.47 54.47
VIT_01s0010g03450.t01 Wine grape plasma membrane 56.77 54.42
KRH04198 Soybean extracellular, plasma membrane, vacuole 39.19 54.18
KRH40897 Soybean plasma membrane 59.65 54.05
KRG89109 Soybean plasma membrane 59.08 53.52
Solyc12g099580.1.1 Tomato plasma membrane 53.89 51.94
CDY60103 Canola plasma membrane 15.85 50.93
AT3G30340.1 Thale cress plasma membrane 49.86 47.53
CDY66443 Canola plasma membrane 49.28 47.11
CDY69734 Canola plasma membrane 40.35 46.67
CDY45904 Canola plasma membrane 48.41 46.28
Bra000926.1-P Field mustard plasma membrane 43.52 46.18
CDY35779 Canola plasma membrane 47.84 45.73
GSMUA_Achr7P04640_001 Banana extracellular, golgi, vacuole 42.36 45.37
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular 23.05 44.94
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular 23.05 44.94
CDX91850 Canola plasma membrane 38.33 44.78
CDY07144 Canola plasma membrane 46.97 44.78
Solyc01g066850.2.1 Tomato plasma membrane 50.72 44.67
Bra037413.1-P Field mustard plasma membrane 46.69 44.63
CDY51711 Canola plasma membrane 46.69 44.63
Bra025414.1-P Field mustard extracellular, plasma membrane, vacuole 26.8 44.5
GSMUA_Achr1P06340_001 Banana extracellular, golgi 45.24 44.48
AT4G01440.1 Thale cress plasma membrane 46.69 44.38
Bra000923.1-P Field mustard plasma membrane 45.82 44.29
CDX68485 Canola plasma membrane 40.92 44.24
CDX74385 Canola plasma membrane 45.53 43.65
AT4G01450.2 Thale cress plasma membrane 45.24 43.49
CDX83041 Canola plasma membrane 40.35 43.48
CDX97249 Canola plasma membrane 45.24 43.37
CDY01936 Canola plasma membrane 45.24 43.37
CDX91849 Canola plasma membrane 44.96 43.09
Bra008548.1-P Field mustard extracellular, plasma membrane 43.23 42.98
OQU75691 Sorghum plasma membrane 43.8 42.94
HORVU7Hr1G002600.1 Barley golgi, plasma membrane, vacuole 43.52 42.9
Bra000925.1-P Field mustard plasma membrane 42.36 42.86
Bra029909.1-P Field mustard plasma membrane 31.12 42.69
CDX74381 Canola plasma membrane 44.67 42.58
TraesCS4A01G464200.1 Wheat golgi, plasma membrane, vacuole 42.94 42.57
TraesCS7D01G022700.1 Wheat golgi, plasma membrane, vacuole 42.94 42.57
TraesCS6D01G009800.1 Wheat plasma membrane 42.36 41.76
TraesCS5A01G015800.1 Wheat plasma membrane 39.48 41.52
TraesCS6B01G015400.1 Wheat plasma membrane 41.5 41.5
CDX91847 Canola plasma membrane 42.65 41.46
TraesCS6A01G008800.2 Wheat plasma membrane 41.79 41.31
TraesCS7A01G024800.1 Wheat extracellular, golgi, mitochondrion, plasma membrane 42.94 41.05
Zm00001d054085_P001 Maize plasma membrane 40.92 41.04
TraesCS1B01G041700.1 Wheat plasma membrane 37.46 40.75
TraesCS5D01G021800.1 Wheat plasma membrane 38.9 40.66
Bra036199.1-P Field mustard plasma membrane 46.97 40.65
Os04t0422300-01 Rice plasma membrane 43.8 40.64
CDX97247 Canola plasma membrane 42.07 40.44
Bra008546.1-P Field mustard cytosol, extracellular, plastid 26.8 40.09
EER87714 Sorghum endoplasmic reticulum, plasma membrane, plastid 41.21 40.06
AT1G11460.1 Thale cress golgi, plasma membrane, vacuole 38.62 39.76
Zm00001d054081_P001 Maize plasma membrane 40.06 39.71
Os02t0103500-00 Rice endoplasmic reticulum, plasma membrane 42.65 39.26
AT1G11450.3 Thale cress golgi, plasma membrane, vacuole 39.48 38.92
AT1G01070.1 Thale cress golgi, plasma membrane, vacuole 40.92 38.9
TraesCS5B01G014100.1 Wheat plasma membrane 38.9 38.79
TraesCS6B01G014700.1 Wheat plasma membrane 39.48 38.7
TraesCS6D01G012400.1 Wheat plasma membrane 39.48 38.7
OQU84142 Sorghum plasma membrane 41.79 38.67
AT4G01430.1 Thale cress plasma membrane 40.63 38.63
Os06t0109300-01 Rice golgi, plasma membrane 40.06 38.61
EES04319 Sorghum extracellular, golgi, plasma membrane 40.35 38.57
TraesCS7D01G022800.1 Wheat plasma membrane 40.63 38.52
TraesCS6D01G044200.1 Wheat plasma membrane 36.6 38.48
TraesCS7A01G024900.1 Wheat plasma membrane 40.63 38.42
TraesCS6A01G009400.1 Wheat plasma membrane 39.19 38.42
CDY15204 Canola plasma membrane 40.06 38.29
Bra033290.1-P Field mustard plasma membrane 38.9 38.03
TraesCS6B01G015700.1 Wheat plasma membrane 38.9 38.03
CDX90005 Canola plasma membrane 39.48 37.74
TraesCS6A01G008700.1 Wheat plasma membrane 38.04 37.71
TraesCS6D01G009900.2 Wheat plasma membrane 38.04 37.71
CDY70635 Canola plasma membrane 27.38 37.7
Bra032617.1-P Field mustard plasma membrane 39.19 37.67
CDY32447 Canola plasma membrane 32.56 37.67
CDY70787 Canola golgi, plasma membrane 27.67 37.65
HORVU6Hr1G000600.1 Barley plasma membrane 38.62 37.64
CDX97245 Canola plastid 12.1 37.5
TraesCS4A01G464100.1 Wheat plasma membrane 40.06 37.47
CDY55329 Canola plasma membrane 38.9 37.4
Bra008545.1-P Field mustard endoplasmic reticulum, plasma membrane 29.11 36.86
CDX97244 Canola endoplasmic reticulum, plasma membrane 29.11 36.86
HORVU6Hr1G000500.17 Barley plasma membrane 38.04 36.67
Bra032618.1-P Field mustard plasma membrane 38.33 36.14
CDY32446 Canola plasma membrane 38.33 36.14
CDY37472 Canola cytosol, golgi, plasma membrane 38.33 36.14
TraesCS6A01G038300.1 Wheat plasma membrane 25.07 35.95
EER87705 Sorghum plasma membrane 37.75 35.69
Os06t0107600-01 Rice plasma membrane 36.31 34.71
Bra020740.1-P Field mustard extracellular 20.17 34.65
TraesCS5D01G032500.1 Wheat extracellular, golgi, plasma membrane 26.22 33.46
Solyc11g005350.1.1 Tomato plasma membrane 36.02 33.42
Zm00001d045576_P001 Maize plasma membrane 37.75 33.0
TraesCS7D01G016700.1 Wheat golgi, plasma membrane, vacuole 35.16 32.88
Solyc12g035400.1.1 Tomato plasma membrane 33.14 32.76
HORVU7Hr1G002200.2 Barley plasma membrane 34.58 32.61
TraesCS4B01G086600.1 Wheat plasma membrane 33.14 32.39
TraesCS7A01G020400.1 Wheat plasma membrane 34.58 32.34
HORVU7Hr1G019700.4 Barley plasma membrane 32.56 31.65
TraesCS7D01G082900.1 Wheat plasma membrane 32.28 31.37
TraesCS4A01G472400.1 Wheat plasma membrane 34.01 31.3
TraesCS4D01G164600.1 Wheat plasma membrane 24.21 30.66
Solyc11g005410.1.1 Tomato plasma membrane 33.43 30.61
Solyc01g100880.2.1 Tomato plasma membrane 31.41 30.45
HORVU5Hr1G002470.1 Barley golgi 21.61 30.12
Solyc12g096850.1.1 Tomato plasma membrane 30.55 30.11
HORVU5Hr1G002560.1 Barley endoplasmic reticulum 21.33 28.35
TraesCS7A01G087800.1 Wheat plasma membrane 32.85 28.29
Solyc03g080070.2.1 Tomato plasma membrane 31.7 28.28
CDX86350 Canola plasma membrane 48.99 28.01
HORVU5Hr1G067230.40 Barley mitochondrion 40.63 27.92
Solyc01g100910.2.1 Tomato plasma membrane 29.39 27.87
TraesCS4A01G386700.1 Wheat plasma membrane 32.28 27.72
Solyc01g100890.2.1 Tomato plasma membrane 29.97 27.66
Solyc07g015910.2.1 Tomato plasma membrane 31.12 27.48
Solyc01g100920.2.1 Tomato golgi, plasma membrane, vacuole 29.68 27.32
Solyc01g104750.2.1 Tomato plasma membrane 30.55 27.18
Solyc01g100900.2.1 Tomato golgi, plasma membrane, vacuole 28.53 26.9
GSMUA_Achr7P17540_001 Banana plasma membrane 43.23 26.27
Os06t0109200-01 Rice plasma membrane 21.04 20.39
Zm00001d045567_P001 Maize plasma membrane 42.07 19.01
Os02t0103700-01 Rice nucleus 0.0 0.0
Protein Annotations
MapMan:24.2.1.5InterPro:EamA_domGO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0005623
GO:GO:0005886GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857
GO:GO:0055085UniProt:K4BNR6PFAM:PF00892PANTHER:PTHR31218PANTHER:PTHR31218:SF10SUPFAM:SSF103481
EnsemblPlantsGene:Solyc04g007590.1EnsemblPlants:Solyc04g007590.1.1TMHMM:TMhelixUniParc:UPI0002766B9CInterPro:WAT1-relatedSEG:seg
Description
WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:K4BNR6]
Coordinates
chr4:-:1271481..1274405
Molecular Weight (calculated)
38051.1 Da
IEP (calculated)
9.358
GRAVY (calculated)
0.626
Length
347 amino acids
Sequence
(BLAST)
001: MSFFEKWNAV SAMIVVEFAL AIVNALFKKV LNRGMNQLVI TTYRFSISTI VLTPIACFLE RNFISNLTAR VVCSLFFSAL LGGTLTQYFF LIGLKYTSAT
101: FSCAFINMVP INTFIMSLLL GQENINMKCK SGRAKALGTL CCLGGALILT LYKGMPLIDQ STPEVEVNHN VKSWIVGSSF LFAGSVVWSS WFLIQARIGK
201: DYPYQYSSTA IMSFLGAIQS AILSLVIDRN TSTWFLKGTL EISTVIYAGV VGSGLCYVVM SWCVKQKGAV FTSAFSPLIQ IFAAVIDISI LHEQIHLGSI
301: LGSILVIIGL YILLWGKSKD TQNLKNSPTT EKNVQPTLPV TSSPSHT
Best Arabidopsis Sequence Match ( AT3G30340.1 )
(BLAST)
001: MVKFDTKLWK AVLMMSMINI GLSVVNVMFK KMIDEGLNRM VATTYRLAVG TLFLIPFAIF LERHNRPKLT GRILCSLFFS ALLGTSLVQY FFLIGLEYTS
101: STFSLAFSNM VPSVTFALAL VFRQETLNIK SNVGRAKLLG TMICICGALV LTLYKGTALS REHSTHMETH TRTDSTGAMT QKWAMGSIML VISIIIWSSW
201: FIVQAKISRV YPCQYTSTTI LSFFGVIQSA LLSLISERST SMWVVKDKFQ VLALLYSGIV GSGLCYVGMS WCLRQRGAVF TSSFIPLIQV FAAIFSFSFL
301: HEQIYCGSVI GSMVIIVGLY ILLWGKSKDK SASVTKQEPL DLDIEGCGTA PKELNSTAHQ VSAK
Arabidopsis Description
WAT1-related protein At3g30340 [Source:UniProtKB/Swiss-Prot;Acc:Q9LI65]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.