Factsheet for Os02t0103700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 19621931
nucleus: 23777608
golgi: 25047511
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21225	Soybean	mitochondrion, nucleus, plasma membrane, plastid	18.23	4.75
Solyc01g066850.2.1	Tomato	plasma membrane	2.6	1.27
KRH42891	Soybean	plasma membrane	2.08	1.02
Os10t0197700-00	Rice	plasma membrane	1.56	0.72
KRH40897	Soybean	plasma membrane	0.0	0.0
Os06t0107600-01	Rice	plasma membrane	0.0	0.0
Os05t0357500-00	Rice	cytosol	0.0	0.0
Os04t0687800-01	Rice	plasma membrane	0.0	0.0
Os04t0422300-01	Rice	plasma membrane	0.0	0.0
Os02t0103500-00	Rice	endoplasmic reticulum, plasma membrane	0.0	0.0
Os01t0297700-01	Rice	plasma membrane	0.0	0.0
OQU84142	Sorghum	plasma membrane	0.0	0.0
KRH58997	Soybean	plasma membrane	0.0	0.0
Os06t0109300-01	Rice	golgi, plasma membrane	0.0	0.0
KRH36123	Soybean	endoplasmic reticulum, plasma membrane, vacuole	0.0	0.0
KRH11051	Soybean	plasma membrane	0.0	0.0
KRH04198	Soybean	extracellular, plasma membrane, vacuole	0.0	0.0
KRG90631	Soybean	plasma membrane	0.0	0.0
KRG89109	Soybean	plasma membrane	0.0	0.0
CDY70787	Canola	golgi, plasma membrane	0.0	0.0
CDY70635	Canola	plasma membrane	0.0	0.0
CDY69734	Canola	plasma membrane	0.0	0.0
CDY66443	Canola	plasma membrane	0.0	0.0
Solyc04g007590.1.1	Tomato	nucleus	0.0	0.0
Zm00001d054085_P001	Maize	plasma membrane	0.0	0.0
VIT_02s0025g03180.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	0.0	0.0
VIT_01s0010g03480.t01	Wine grape	plasma membrane	0.0	0.0
VIT_01s0010g03450.t01	Wine grape	plasma membrane	0.0	0.0
TraesCS6D01G009800.1	Wheat	plasma membrane	0.0	0.0
TraesCS6B01G015400.1	Wheat	plasma membrane	0.0	0.0
TraesCS6A01G008800.2	Wheat	plasma membrane	0.0	0.0
TraesCS5D01G032500.1	Wheat	extracellular, golgi, plasma membrane	0.0	0.0
TraesCS4D01G164600.1	Wheat	plasma membrane	0.0	0.0
Solyc12g099580.1.1	Tomato	plasma membrane	0.0	0.0
Os06t0109200-01	Rice	plasma membrane	0.0	0.0
PGSC0003DMT400029440	Potato	plasma membrane	0.0	0.0
PGSC0003DMT400015286	Potato	plasma membrane	0.0	0.0
PGSC0003DMT400011804	Potato	plasma membrane	0.0	0.0
Os12t0288000-02	Rice	golgi, plasma membrane	0.0	0.0
Os10t0199500-01	Rice	golgi, plasma membrane, vacuole	0.0	0.0
Os10t0198900-00	Rice	plasma membrane	0.0	0.0
Os10t0163130-01	Rice	plasma membrane	0.0	0.0
Os08t0402800-01	Rice	golgi, plasma membrane, vacuole	0.0	0.0
CDY60103	Canola	plasma membrane	0.0	0.0
Bra008546.1-P	Field mustard	cytosol, extracellular, plastid	0.0	0.0
CDX68485	Canola	plasma membrane	0.0	0.0
Bra037413.1-P	Field mustard	plasma membrane	0.0	0.0
Bra036199.1-P	Field mustard	plasma membrane	0.0	0.0
Bra033290.1-P	Field mustard	plasma membrane	0.0	0.0
Bra032618.1-P	Field mustard	plasma membrane	0.0	0.0
Bra032617.1-P	Field mustard	plasma membrane	0.0	0.0
Bra029909.1-P	Field mustard	plasma membrane	0.0	0.0
Bra025414.1-P	Field mustard	extracellular, plasma membrane, vacuole	0.0	0.0
Bra020740.1-P	Field mustard	extracellular	0.0	0.0
Bra008548.1-P	Field mustard	extracellular, plasma membrane	0.0	0.0
CDX74381	Canola	plasma membrane	0.0	0.0
Bra008545.1-P	Field mustard	endoplasmic reticulum, plasma membrane	0.0	0.0
Bra000926.1-P	Field mustard	plasma membrane	0.0	0.0
Bra000925.1-P	Field mustard	plasma membrane	0.0	0.0
Bra000923.1-P	Field mustard	plasma membrane	0.0	0.0
AT4G01450.2	Thale cress	plasma membrane	0.0	0.0
AT4G01440.1	Thale cress	plasma membrane	0.0	0.0
AT4G01430.1	Thale cress	plasma membrane	0.0	0.0
AT3G30340.1	Thale cress	plasma membrane	0.0	0.0
AT1G11460.1	Thale cress	golgi, plasma membrane, vacuole	0.0	0.0
AT1G11450.3	Thale cress	golgi, plasma membrane, vacuole	0.0	0.0
CDX97249	Canola	plasma membrane	0.0	0.0
CDY55329	Canola	plasma membrane	0.0	0.0
CDY51711	Canola	plasma membrane	0.0	0.0
CDY45904	Canola	plasma membrane	0.0	0.0
CDY37472	Canola	cytosol, golgi, plasma membrane	0.0	0.0
CDY35779	Canola	plasma membrane	0.0	0.0
CDY32447	Canola	plasma membrane	0.0	0.0
CDY32446	Canola	plasma membrane	0.0	0.0
CDY15204	Canola	plasma membrane	0.0	0.0
CDY07144	Canola	plasma membrane	0.0	0.0
CDY01936	Canola	plasma membrane	0.0	0.0
AT1G01070.1	Thale cress	golgi, plasma membrane, vacuole	0.0	0.0
CDX97247	Canola	plasma membrane	0.0	0.0
CDX97245	Canola	plastid	0.0	0.0
CDX97244	Canola	endoplasmic reticulum, plasma membrane	0.0	0.0
CDX91850	Canola	plasma membrane	0.0	0.0
CDX91849	Canola	plasma membrane	0.0	0.0
CDX91847	Canola	plasma membrane	0.0	0.0
CDX90005	Canola	plasma membrane	0.0	0.0
CDX86350	Canola	plasma membrane	0.0	0.0
CDX83041	Canola	plasma membrane	0.0	0.0
CDX74385	Canola	plasma membrane	0.0	0.0

Protein Annotations

MapMan:17.1.2.1.8	Gene3D:3.90.930.12	EntrezGene:4327999	EMBL:AK062502	EMBL:AK102186	ProteinID:BAF07521.1
ProteinID:BAS76540.1	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0022625	InterPro:IPR036789	EnsemblPlantsGene:Os02g0103700
EnsemblPlants:Os02t0103700-01	PFAM:PF00347	PIRSF:PIRSF002162	ScanProsite:PS00700	PANTHER:PTHR11655	PANTHER:PTHR11655:SF24
UniProt:Q0E4R7	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS2	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	SUPFAM:SSF56053
UniParc:UPI000043DF0D	RefSeq:XP_015625200.1	SEG:seg	:	:	:

Description

Similar to 60S ribosomal protein L9 (Gibberellin-regulated protein GA). (Os02t0103700-01)

Coordinates

chr2:-:180352..183440

Molecular Weight (calculated)

21644.4 Da

IEP (calculated)

10.238

GRAVY (calculated)

-0.199

Length

192 amino acids

Sequence
(BLAST)

001: MKTILASETM EIPSGVTVHV AAKVVTVEGP RGKLTRNFKH LNLDFQLLEV EGVRKLQVDA WFGTRRTMAA IRTAISHVQN LITGVTKGYR YKMRFVYAHF
101: PINASITNSN TAIEIRNFLG EKKVRKVDML EGVTILRSEK VKDELVLDGN DIELVSRSAA LINQKCHVKN KDIRKFLDGI YVSDKGTITE DQ

Best Arabidopsis Sequence Match ( AT1G33120.1 )
(BLAST)

001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE

Arabidopsis Description

RPL9C60S ribosomal protein L9-1 [Source:UniProtKB/Swiss-Prot;Acc:P49209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.