CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
extracellular 1
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73496
CDX78219

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G32980.1	CDX73496	AT3G54220.1	19228333
AT3G32980.1	CDX78219	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039816.1-P	Field mustard	plastid	93.32	98.59
CDY37218	Canola	extracellular	74.6	93.0
AT3G32980.1	Thale cress	extracellular	85.56	90.91
CDX83066	Canola	extracellular	81.28	87.11
CDX68508	Canola	extracellular	80.75	86.53
CDY05905	Canola	extracellular, plastid	80.21	84.75
CDY08111	Canola	extracellular	79.14	83.62
CDY08110	Canola	extracellular, plastid	75.4	79.89
CDY05904	Canola	extracellular	75.4	79.89
CDY05024	Canola	extracellular	70.05	74.43
CDX75140	Canola	extracellular	69.52	73.86
CDY54347	Canola	plasma membrane	68.45	72.73
CDY54418	Canola	extracellular	63.64	68.0
CDY18388	Canola	extracellular	63.64	68.0
CDY54419	Canola	cytosol	60.96	67.86
CDY70745	Canola	extracellular	39.84	66.52
CDY70137	Canola	extracellular	60.7	65.23
CDY65894	Canola	extracellular	59.89	64.18
CDY54420	Canola	extracellular	59.89	64.0
CDY18387	Canola	extracellular	59.63	63.71
CDY07731	Canola	extracellular	43.85	62.6
CDY66100	Canola	extracellular	27.27	56.98
CDY42311	Canola	cytosol	3.74	56.0
CDX98949	Canola	extracellular	47.33	52.37
CDX70075	Canola	extracellular	46.52	51.48
CDX98950	Canola	extracellular	48.4	50.56
CDX70074	Canola	extracellular	48.13	50.28
CDY35842	Canola	extracellular	44.38	50.15
CDX92492	Canola	extracellular	43.58	49.85
CDY42313	Canola	extracellular	43.05	49.69
CDY44951	Canola	extracellular	42.78	49.38
CDY42312	Canola	extracellular	33.42	47.71
CDY45216	Canola	extracellular	42.51	47.18
CDY44950	Canola	extracellular	41.44	47.11
CDX92493	Canola	extracellular	41.44	46.97
CDY65385	Canola	extracellular	42.25	46.88
CDX81401	Canola	extracellular	41.98	46.59
CDY64926	Canola	extracellular	41.18	46.53
CDY46313	Canola	extracellular	41.71	46.43
CDY35844	Canola	extracellular	40.91	46.36
CDY59700	Canola	extracellular	40.64	46.2
CDY25139	Canola	extracellular	41.44	46.13
CDY25140	Canola	extracellular	41.44	46.13
CDX69223	Canola	extracellular	40.64	45.92
CDY35845	Canola	extracellular	40.37	45.76
CDY68097	Canola	extracellular	40.37	45.76
CDX75574	Canola	extracellular	40.37	45.62
CDX77970	Canola	extracellular	39.3	43.62
CDX84214	Canola	extracellular	36.9	42.72
CDY12580	Canola	extracellular, plasma membrane, vacuole	39.57	42.65
CDX77234	Canola	extracellular	37.43	42.3
CDY65368	Canola	extracellular	36.36	42.24
CDX73762	Canola	extracellular	37.97	42.14
CDY47953	Canola	extracellular, plasma membrane, vacuole	38.77	41.79
CDY14598	Canola	cytosol	16.31	41.78
CDY13763	Canola	cytosol	35.03	41.72
CDY25594	Canola	extracellular	35.83	40.73
CDX89462	Canola	extracellular	35.56	40.43
CDX76927	Canola	extracellular	35.29	40.0
CDY07363	Canola	extracellular	35.56	39.82
CDY33582	Canola	extracellular	35.56	39.7
CDY04260	Canola	extracellular	35.29	39.52
CDX95981	Canola	extracellular	35.29	39.4
CDY38693	Canola	extracellular	35.29	39.4
CDY34446	Canola	extracellular, golgi	38.77	39.4
CDY16509	Canola	extracellular	38.77	39.3
CDY32232	Canola	extracellular, golgi	38.24	38.86
CDY45848	Canola	extracellular	34.76	38.69
CDX81562	Canola	extracellular	34.49	38.39
CDX75576	Canola	mitochondrion	40.37	18.08

Protein Annotations

KEGG:00940+1.11.1.7	Gene3D:1.10.420.10	Gene3D:1.10.520.10	MapMan:35.1	GO:A0A078D2A3	EnsemblPlants:CDX81458
ProteinID:CDX81458	ProteinID:CDX81458.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488
GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0020037	GO:GO:0042744	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00135043001	InterPro:Haem_peroxidase	InterPro:Haem_peroxidase_pln/fun/bac
InterPro:IPR002016	PFAM:PF00141	PRINTS:PR00458	PRINTS:PR00461	ScanProsite:PS00435	ScanProsite:PS00436
PFscan:PS50873	PANTHER:PTHR31388	PANTHER:PTHR31388:SF22	MetaCyc:PWY-5461	MetaCyc:PWY-7214	MetaCyc:PWY-7445
InterPro:Peroxidase_pln	InterPro:Peroxidases_AS	InterPro:Peroxidases_heam-ligand_BS	SUPFAM:SSF48113	InterPro:Secretory_peroxidase	UniParc:UPI0004EDCD3C
SEG:seg	:	:	:	:	:

Description

BnaC09g08690D

Coordinates

chrLK031824:+:1924066..1926690

Molecular Weight (calculated)

41321.3 Da

IEP (calculated)

7.449

GRAVY (calculated)

-0.110

Length

374 amino acids

Sequence
(BLAST)

001: MEFPHLSLVK SIREFSSEKK MHSSSLSSLS TWTTLITVGC LMLHTSFSSA QVLTPTFYDN TCRNVSTIVR GIIVNELRSD PRIAASLLRL HFHDCFVNGC
101: DASILLDNTT SFRTEKDAAP NANSARGFPV VDRMKAAVEA ACPRTVSCAD ILTIAAQQSV ELAGGPSWRV PLGRRDSLQA FFDLSNNNLP APFFTLPQLK
201: ASFSNVGLNL PSDLVALSGG HTFGKNQCQF IMDRLYNFTN TGLPDPTLNT TYLQTLRGLC PRNGNQSVLV DFDLRTPTVF DNKYYVNLKE HKGLIQTDQE
301: LFSSPNATDT IPLVREYADG TQKFFNAFIK AMDRMGNITP LTGSQGQIRQ NCRVVNSNSL LHDVVEIVDF VSSM

Best Arabidopsis Sequence Match ( AT3G32980.1 )
(BLAST)

001: MNFSYSSLST WTTLMTLGCL LLHSSISSAQ LTPTFYDNTC PSVFTIVRDT IVNELRSDPR IAASILRLHF HDCFVNGCDA SILLDNTTSF RTEKDAAPNA
101: NSARGFPVID RMKAAVETAC PRTVSCADIL TIAAQQAVNL AGGPSWRVPL GRRDSLQAFF ALANTNLPAP FFTLPQLKAS FQNVGLDRPS DLVALSGGHT
201: FGKNQCQFIM DRLYNFSNTG LPDPTLNTTY LQTLRGQCPR NGNQTVLVDF DLRTPTVFDN KYYVNLKELK GLIQTDQELF SSPNATDTIP LVREYADGTQ
301: KFFNAFVEAM NRMGNITPLT GTQGQIRQNC RVVNSNSLLH DVVEIVDFVS SM

Arabidopsis Description

PER32Peroxidase 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHB9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.