CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004690.1-P	Field mustard	plasma membrane	95.41	95.85
AT2G42390.1	Thale cress	plasma membrane	71.1	73.11
KRH55830	Soybean	plasma membrane	45.41	52.38
PGSC0003DMT400027390	Potato	endoplasmic reticulum, plasma membrane	48.17	52.24
Solyc10g008100.2.1	Tomato	plasma membrane	46.33	50.0
VIT_12s0028g02620.t01	Wine grape	plasma membrane	46.33	49.27
KRH25690	Soybean	plastid	46.33	44.69
GSMUA_Achr4P02770_001	Banana	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane	41.28	42.06
OQU87548	Sorghum	plasma membrane	39.45	38.91
TraesCS3A01G291300.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, peroxisome	38.99	36.8
TraesCS3B01G325900.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	38.53	36.36
Zm00001d012737_P001	Maize	endoplasmic reticulum	39.45	35.39
TraesCS3D01G291000.1	Wheat	plasma membrane	37.61	34.31
CDY11931	Canola	endoplasmic reticulum	39.91	13.32
CDY36796	Canola	endoplasmic reticulum	39.45	13.21
CDY32789	Canola	endoplasmic reticulum	38.07	12.95
CDY46579	Canola	endoplasmic reticulum	37.16	12.58

Protein Annotations

MapMan:35.1	GO:A0A078JGI1	UniProt:A0A078JGI1	EnsemblPlants:CDY64519	ProteinID:CDY64519	ProteinID:CDY64519.1
GO:GO:0005575	GO:GO:0006491	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00042311001	InterPro:Glucosidase_2_bsu	PFAM:PF12999	InterPro:PRKCSH_N
PANTHER:PTHR12630	PANTHER:PTHR12630:SF10	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EE0589	SEG:seg

Description

BnaC04g52760DBnaC04g52760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGI1]

Coordinates

chrLK034478:+:22613..23782

Molecular Weight (calculated)

24417.3 Da

IEP (calculated)

9.143

GRAVY (calculated)

-0.313

Length

218 amino acids

Sequence
(BLAST)

001: MSRNKVTLLH YVSSFLLAVV SVNSSTTPLV GVHPLADEKY FESDIIRCKD GSKSFPKDRL NDNFCDCLDG TDEPGTSACP NGKFYCRNIG SSPKFVYSSR
101: VNDRICDCCD GSDEYESSIS CPNTCVMGGN VNYIYKPRTG RKSIDRQLGS ATTDPNSSIT IANLQDMVKN LQGMKLVFAL QFVLIGFLVI LWMLRRRVRS
201: SKRRRYLLKS VHPNRSAN

Best Arabidopsis Sequence Match ( AT2G42390.1 )
(BLAST)

001: MLLQCVVLCS SLAVVVISVA STSPLVGVHP LDEKYFDSDV IKCKDGSKSF TRDRLNDNFC DCLDGTDEPG TSACPNGKFY CRNIGSSPKF VYSSRVNDRI
101: CDCCDGSDEY ESSIHCPNTC IMGGNVNYIY KPRANLKSIH LQLGSTPHPK EFYTIGNLQD MVKNLQGMKL VFALQMVFIG FLVILWMLRS RARSKRRRYL
201: LKNVPPINRS AN

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLC0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.