Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 6
- vacuole 4
- plasma membrane 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004690.1-P | Field mustard | plasma membrane | 73.58 | 71.89 |
| CDY64519 | Canola | extracellular, plasma membrane | 73.11 | 71.1 |
| KRH55830 | Soybean | plasma membrane | 48.11 | 53.97 |
| PGSC0003DMT400027390 | Potato | endoplasmic reticulum, plasma membrane | 47.64 | 50.25 |
| VIT_12s0028g02620.t01 | Wine grape | plasma membrane | 47.17 | 48.78 |
| Solyc10g008100.2.1 | Tomato | plasma membrane | 44.34 | 46.53 |
| GSMUA_Achr4P02770_001 | Banana | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane | 45.28 | 44.86 |
| KRH25690 | Soybean | plastid | 47.64 | 44.69 |
| OQU87548 | Sorghum | plasma membrane | 41.51 | 39.82 |
| TraesCS3A01G291300.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, peroxisome | 41.04 | 37.66 |
| TraesCS3B01G325900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 41.04 | 37.66 |
| TraesCS3D01G291000.1 | Wheat | plasma membrane | 40.57 | 35.98 |
| Zm00001d012737_P001 | Maize | endoplasmic reticulum | 41.04 | 35.8 |
| AT5G56360.1 | Thale cress | endoplasmic reticulum | 37.74 | 12.36 |
Protein Annotations
| MapMan:35.1 | EntrezGene:818840 | UniProt:A0A178VUQ4 | ProteinID:AAD23722.2 | ProteinID:AEC10115.1 | EMBL:AK229713 |
| ArrayExpress:AT2G42390 | EnsemblPlantsGene:AT2G42390 | RefSeq:AT2G42390 | TAIR:AT2G42390 | RefSeq:AT2G42390-TAIR-G | EnsemblPlants:AT2G42390.1 |
| TAIR:AT2G42390.1 | EMBL:AY084977 | EMBL:BT008571 | EMBL:BT008660 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0006491 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016301 | GO:GO:0016310 | GO:GO:0016740 | GO:GO:0019538 | InterPro:Glucosidase_2_bsu |
| RefSeq:NP_565971.1 | ProteinID:OAP09546.1 | PFAM:PF12999 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | InterPro:PRKCSH_N | PANTHER:PTHR12630 | PANTHER:PTHR12630:SF10 |
| UniProt:Q9SLC0 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00000A1572 | SEG:seg | : |
Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLC0]
Coordinates
chr2:-:17651106..17652643
Molecular Weight (calculated)
23750.8 Da
IEP (calculated)
8.541
GRAVY (calculated)
-0.142
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLQCVVLCS SLAVVVISVA STSPLVGVHP LDEKYFDSDV IKCKDGSKSF TRDRLNDNFC DCLDGTDEPG TSACPNGKFY CRNIGSSPKF VYSSRVNDRI
101: CDCCDGSDEY ESSIHCPNTC IMGGNVNYIY KPRANLKSIH LQLGSTPHPK EFYTIGNLQD MVKNLQGMKL VFALQMVFIG FLVILWMLRS RARSKRRRYL
201: LKNVPPINRS AN
101: CDCCDGSDEY ESSIHCPNTC IMGGNVNYIY KPRANLKSIH LQLGSTPHPK EFYTIGNLQD MVKNLQGMKL VFALQMVFIG FLVILWMLRS RARSKRRRYL
201: LKNVPPINRS AN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.