Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G291300.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, peroxisome | 82.85 | 85.71 |
| TraesCS3B01G325900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 82.01 | 84.85 |
| OQU87548 | Sorghum | plasma membrane | 61.92 | 66.97 |
| Zm00001d012737_P001 | Maize | endoplasmic reticulum | 64.02 | 62.96 |
| GSMUA_Achr4P02770_001 | Banana | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane | 43.51 | 48.6 |
| KRH55830 | Soybean | plasma membrane | 32.22 | 40.74 |
| AT2G42390.1 | Thale cress | plasma membrane | 35.98 | 40.57 |
| VIT_12s0028g02620.t01 | Wine grape | plasma membrane | 34.73 | 40.49 |
| PGSC0003DMT400027390 | Potato | endoplasmic reticulum, plasma membrane | 33.47 | 39.8 |
| Solyc10g008100.2.1 | Tomato | plasma membrane | 33.05 | 39.11 |
| Bra004690.1-P | Field mustard | plasma membrane | 34.31 | 37.79 |
| CDY64519 | Canola | extracellular, plasma membrane | 34.31 | 37.61 |
| KRH25690 | Soybean | plastid | 32.64 | 34.51 |
| TraesCS3D01G192900.1 | Wheat | endoplasmic reticulum | 33.89 | 13.39 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G291000.1 | EnsemblPlantsGene:TraesCS3D01G291000 | InterPro:PRKCSH_N | PANTHER:PTHR12630 | PFAM:PF12999 | SEG:seg |
| SignalP:SignalP-noTM | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr3D:-:401049525..401051060
Molecular Weight (calculated)
26325.5 Da
IEP (calculated)
6.745
GRAVY (calculated)
-0.044
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPRQQSRRL VSSAAPATLL LLLLAGAADA EPPLVGVSPQ DEAYFAPQVI ACRDGSGSFP RSRLNDGYCD CTDGTDEPGT SACPEGKFYC INTGDLPRIL
101: FSSFVNDNIC DCCDGSDEYE SGIHCPNTCK KRHDTAETDN GVSELSVAHL GGTDIISSKH TLDIEDLIQK LRGLRMAAVI ELGVVVCIFV FYFARRSTRA
201: RRRQYILKRK LWPLQFISVF FLSVVLPPIH IYCHGFSKV
101: FSSFVNDNIC DCCDGSDEYE SGIHCPNTCK KRHDTAETDN GVSELSVAHL GGTDIISSKH TLDIEDLIQK LRGLRMAAVI ELGVVVCIFV FYFARRSTRA
201: RRRQYILKRK LWPLQFISVF FLSVVLPPIH IYCHGFSKV
001: MLLQCVVLCS SLAVVVISVA STSPLVGVHP LDEKYFDSDV IKCKDGSKSF TRDRLNDNFC DCLDGTDEPG TSACPNGKFY CRNIGSSPKF VYSSRVNDRI
101: CDCCDGSDEY ESSIHCPNTC IMGGNVNYIY KPRANLKSIH LQLGSTPHPK EFYTIGNLQD MVKNLQGMKL VFALQMVFIG FLVILWMLRS RARSKRRRYL
201: LKNVPPINRS AN
101: CDCCDGSDEY ESSIHCPNTC IMGGNVNYIY KPRANLKSIH LQLGSTPHPK EFYTIGNLQD MVKNLQGMKL VFALQMVFIG FLVILWMLRS RARSKRRRYL
201: LKNVPPINRS AN
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLC0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.