Factsheet for Os04t0106300-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 22882555

mitochondrion: 19010998
mitochondrion: 23027867
mitochondrion: 23356873
plastid: 27992503

gfp PMID: 22882555

X Ma, Z Cheng, R Qin, Y Qiu, Y Heng, H Yang, Y Ren, X Wang, J Bi, X Ma, X Zhang, J Wang, C Lei, X Guo, J Wang, F Wu, L Jiang, H Wang, J Wan

National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China National Key Laboratory for Crop Genetics and Germplasm Enhancement, Jiangsu Plant Gene Engineering Research Center, Nanjing Agricultural University, Nanjing 210095, China.

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 23356873 doi

S Huang, RP Jacoby, RN Shingaki-Wells, L Li, AH Millar

ARC Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks (CABiN), The University of Western Australia, Bayliss Building M316, 35 Stirling Highway, Crawley, WA, 6009, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G005320.1	Barley	plastid	79.71	95.09
EES10350	Sorghum	mitochondrion	94.71	94.71
TraesCS2D01G034900.1	Wheat	mitochondrion	92.06	92.06
TraesCS2A01G035700.1	Wheat	mitochondrion	88.82	90.15
GSMUA_Achr5P14460_001	Banana	plastid	87.06	89.7
Zm00001d024908_P003	Maize	mitochondrion	94.41	87.47
Bra000659.1-P	Field mustard	mitochondrion	86.76	86.51
CDX90700	Canola	mitochondrion	86.76	86.26
CDY05032	Canola	mitochondrion	86.47	86.22
AT4G08900.1	Thale cress	mitochondrion	86.47	85.96
KRH03979	Soybean	mitochondrion	85.0	85.5
KRH76217	Soybean	mitochondrion	84.71	85.21
Solyc01g091160.2.1	Tomato	plastid	84.12	84.62
Solyc01g091170.2.1	Tomato	plastid	80.59	81.07
VIT_15s0048g00420.t01	Wine grape	cytosol, mitochondrion, plastid	85.0	77.9
TraesCS2B01G048700.1	Wheat	cytosol	91.76	75.0
KRH65329	Soybean	cytosol, nucleus	73.82	74.26
KRH76207	Soybean	cytosol, extracellular	48.53	64.71

Protein Annotations

Gene3D:3.40.800.10	MapMan:4.2.1.1	EntrezGene:4334912	EMBL:AK059655	ProteinID:BAF13927.1	ProteinID:BAS87540.1
ProteinID:CAE02758.1	ProteinID:CAE04612.2	ProteinID:EAZ29443.1	GO:GO:0000050	GO:GO:0003674	GO:GO:0003824
GO:GO:0004053	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006525	GO:GO:0006527	GO:GO:0006560	GO:GO:0006570	GO:GO:0006591
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008783	GO:GO:0009056	GO:GO:0009058
GO:GO:0009445	GO:GO:0009446	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009605
GO:GO:0009607	GO:GO:0009987	GO:GO:0016787	GO:GO:0016813	GO:GO:0030145	GO:GO:0033389
GO:GO:0042742	GO:GO:0046872	GO:GO:0050832	GO:GO:0050897	InterPro:IPR006035	EnsemblPlantsGene:Os04g0106300
EnsemblPlants:Os04t0106300-01	PFAM:PF00491	PIRSF:PIRSF036979	ScanProsite:PS01053	PFscan:PS51409	PANTHER:PTHR11358
PANTHER:PTHR11358:SF32	UniProt:Q7X7N2	SUPFAM:SSF52768	UniParc:UPI00001B16B8	InterPro:Ureohydrolase	InterPro:Ureohydrolase_Mn_BS
InterPro:Ureohydrolase_dom_sf	RefSeq:XP_015636156.1	SEG:seg	:	:	:

Description

NARROW GRAIN AND LOW FERTILITYArginine hydrolysis enzyme, Arginase, Panicle development and grain production (Os04t0106300-01)

Coordinates

chr4:+:396563..400802

Molecular Weight (calculated)

36946.3 Da

IEP (calculated)

6.252

GRAVY (calculated)

-0.172

Length

340 amino acids

Sequence
(BLAST)

001: MGGVAAGTRW IHHVRRLSAA KVSADALERG QSRVIDASLT LIRERAKLKA ELLRALGGVK ASACLLGVPL GHNSSFLQGP AFAPPRIREA IWCGSTNSST
101: EEGKELNDPR VLTDVGDVPI QEIRDCGVED DRLMNVVSES VKTVMEEDPL RPLVLGGDHS ISYPVVRAVS EKLGGPVDIL HLDAHPDIYD AFEGNIYSHA
201: SSFARIMEGG YARRLLQVGI RSITKEGREQ GKRFGVEQYE MRTFSKDREK LESLKLGEGV KGVYISVDVD CLDPAFAPGV SHIEPGGLSF RDVLNILHNL
301: QGDVVAGDVV EFNPQRDTVD GMTAMVAAKL VRELTAKISK

Best Arabidopsis Sequence Match ( AT4G08900.1 )
(BLAST)

001: MSRIIGRKGI NYIHRLNSAS FTSVSASSIE KGQNRVIDAS LTLIRERAKL KGELVRLLGG AKASTSLLGV PLGHNSSFLQ GPAFAPPRIR EAIWCGSTNS
101: ATEEGKELKD PRVLTDVGDV PVQEIRDCGV DDDRLMNVIS ESVKLVMEEE PLRPLVLGGD HSISYPVVRA VSEKLGGPVD ILHLDAHPDI YDCFEGNKYS
201: HASSFARIME GGYARRLLQV GIRSINQEGR EQGKRFGVEQ YEMRTFSKDR PMLENLKLGE GVKGVYISID VDCLDPAFAP GVSHIEPGGL SFRDVLNILH
301: NLQADVVGAD VVEFNPQRDT VDGMTAMVAA KLVRELAAKI SK

Arabidopsis Description

ARGAH1Arginase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P46637]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.