Factsheet for VIT_02s0025g03770.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22187	Soybean	mitochondrion	76.72	72.36
KRH27143	Soybean	mitochondrion	75.0	70.73
GSMUA_Achr3P00060_001	Banana	mitochondrion, plastid	60.34	66.67
Solyc08g007960.1.1	Tomato	mitochondrion	65.52	61.29
Os04t0683400-00	Rice	mitochondrion	62.93	58.4
Zm00001d026648_P001	Maize	mitochondrion	62.93	57.48
EES13127	Sorghum	mitochondrion	62.93	57.03
HORVU1Hr1G081010.1	Barley	mitochondrion	57.76	49.26
TraesCS1A01G354900.1	Wheat	mitochondrion	56.9	48.89
TraesCS1D01G355600.1	Wheat	mitochondrion	56.9	48.89
TraesCS1B01G366800.1	Wheat	mitochondrion	56.9	47.83
TraesCS1D01G354400.1	Wheat	mitochondrion	56.03	46.1
TraesCS1A01G355900.1	Wheat	mitochondrion	55.17	45.39
TraesCS1B01G365500.1	Wheat	mitochondrion	55.17	45.39
VIT_17s0000g01130.t01	Wine grape	nucleus	47.41	21.65
VIT_05s0020g02790.t01	Wine grape	nucleus	48.28	21.37
VIT_19s0085g00520.t01	Wine grape	cytosol	49.14	21.19
VIT_14s0006g02320.t01	Wine grape	cytosol	23.28	20.93
VIT_14s0128g00250.t01	Wine grape	nucleus	47.41	20.91

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100266714	wikigene:100266714	MapMan:15.5.51.3	InterPro:CBFA_NFYB_domain	ProteinID:CBI34694
ProteinID:CBI34694.3	UniProt:D7TW19	EMBL:FN596251	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	EntrezGene:LOC100266714	wikigene:LOC100266714	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF41
SUPFAM:SSF47113	UniParc:UPI00015CD326	ArrayExpress:VIT_02s0025g03770	EnsemblPlantsGene:VIT_02s0025g03770	EnsemblPlants:VIT_02s0025g03770.t01	RefSeq:XP_002269359
RefSeq:XP_002269359.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:3263696..3264243

Molecular Weight (calculated)

12749.6 Da

IEP (calculated)

10.107

GRAVY (calculated)

-0.170

Length

116 amino acids

Sequence
(BLAST)

001: MRQAGTYSGI LNGGMSGRTG PHLLPLARIK KIMKRSGEDV KMISGEAPII FSKACELFIE ELTQRSWKVT LQGKRRTLHK EDVASAVIAT DVFDFLVNVV
101: SKSGANSEDT PVVMER

Best Arabidopsis Sequence Match ( AT1G54830.1 )
(BLAST)

001: MDQQGQSSAM NYGSNPYQTN AMTTTPTGSD HPAYHQIHQQ QQQQLTQQLQ SFWETQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS AEAPVVFARA
101: CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGGVG AEAATAAGYP YGYLPPGTAP IGNPGMVMGN PGAYPPNPYM
201: GQPMWQQPGP EQQDPDN

Arabidopsis Description

NFYC3Nuclear transcription factor Y subunit C-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVL3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.