Factsheet for Bra005414.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17260	Canola	cytosol	97.7	100.0
CDX84306	Canola	cytosol	95.66	97.15
AT2G34560.2	Thale cress	cytosol	90.05	89.82
VIT_10s0003g03500.t01	Wine grape	cytosol	74.74	73.8
Solyc02g070440.2.1	Tomato	cytosol	72.19	73.32
PGSC0003DMT400054532	Potato	cytosol	72.19	72.94
KRH58481	Soybean	cytosol	74.74	72.7
KRH42362	Soybean	cytosol, endoplasmic reticulum	74.74	72.35
TraesCS3B01G305600.2	Wheat	cytosol	71.94	71.39
GSMUA_Achr10P...	Banana	cytosol	69.64	70.54
TraesCS3D01G271500.1	Wheat	cytosol	71.68	70.25
TraesCS3A01G271900.1	Wheat	cytosol	71.68	70.25
Os01t0757400-02	Rice	cytosol	69.13	70.21
EES01499	Sorghum	cytosol	68.11	70.08
TraesCS3A01G294400.1	Wheat	cytosol	67.09	69.58
HORVU3Hr1G072910.6	Barley	cytosol	66.33	69.15
GSMUA_Achr7P25300_001	Banana	cytosol	71.43	68.8
OQU87315	Sorghum	cytosol	70.41	68.49
TraesCS3B01G329000.2	Wheat	cytosol	67.09	67.96
Os01t0673500-01	Rice	cytosol	70.92	67.8
Zm00001d043410_P002	Maize	cytosol	67.86	64.1
TraesCS3D01G294200.1	Wheat	plastid	67.6	59.82
HORVU3Hr1G061800.1	Barley	cytosol, plastid	70.66	59.57
Bra022979.1-P	Field mustard	plastid	86.73	58.93
Zm00001d011563_P019	Maize	mitochondrion	71.17	53.14
Bra004917.1-P	Field mustard	cytosol	27.55	33.86
Bra018640.1-P	Field mustard	cytosol	36.48	33.26
Bra000503.1-P	Field mustard	cytosol	36.22	32.79
Bra012009.1-P	Field mustard	cytosol	35.97	32.56
Bra008479.1-P	Field mustard	cytosol	40.82	30.3
Bra003561.1-P	Field mustard	cytosol	40.31	29.76
Bra019030.1-P	Field mustard	endoplasmic reticulum, plasma membrane	28.83	28.83
Bra026316.1-P	Field mustard	endoplasmic reticulum	28.57	28.57
Bra003048.1-P	Field mustard	endoplasmic reticulum	28.06	27.71
Bra029063.1-P	Field mustard	endoplasmic reticulum	26.53	26.6
Bra039332.1-P	Field mustard	cytosol	29.34	26.32
Bra032982.1-P	Field mustard	plastid	36.99	22.38
Bra003102.1-P	Field mustard	extracellular, plasma membrane	32.91	15.69
Bra029104.1-P	Field mustard	extracellular, plasma membrane	32.91	15.67
Bra026293.1-P	Field mustard	endoplasmic reticulum, extracellular	31.89	15.08
Bra027756.1-P	Field mustard	endoplasmic reticulum	31.89	15.04
Bra024235.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	31.38	14.98
Bra014239.1-P	Field mustard	mitochondrion	32.91	12.91
Bra038230.1-P	Field mustard	cytosol, mitochondrion, plastid	31.12	12.3
Bra032579.1-P	Field mustard	plastid	33.42	11.42
Bra018548.1-P	Field mustard	plastid	33.93	10.91
Bra000878.1-P	Field mustard	plastid	34.18	10.7
Bra036265.1-P	Field mustard	plastid	34.44	10.47
Bra033356.1-P	Field mustard	cytosol, plastid	34.69	9.12

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:50.3.6	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	EnsemblPlantsGene:Bra005414
EnsemblPlants:Bra005414.1	EnsemblPlants:Bra005414.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
UniProt:M4CMH6	InterPro:P-loop_NTPase	PFAM:PF00004	PANTHER:PTHR23074	PANTHER:PTHR23074:SF92	SMART:SM00382
SUPFAM:SSF52540	UniParc:UPI0002548011	:	:	:	:

Description

AT2G34560 (E=2e-201) | katanin, putative

Coordinates

chrA05:-:5367111..5369381

Molecular Weight (calculated)

43963.5 Da

IEP (calculated)

5.566

GRAVY (calculated)

-0.498

Length

392 amino acids

Sequence
(BLAST)

001: MATDEPSLTR WSFLEFKTFY DAKFGRKKLP EEPQESKPED GSSSNKEEDA SQVATNPSQE GNTRLTNGIR EKPKKSMFPP FESAETRALA ESLSRQAILD
101: IIRGNPNVKW ESIKGLENAK RLLKEAVVMP IKYPSYFNGL LSPWKGILLF GPPGTGKTML AKAVATECNT TFFNISASSV VSKWRGDSEK LIRVLFDLAR
201: HHAPSTIFLD EIDAIISQRG GEGRSEHEAS RRLKTELLIQ MDGLQKTNEL VFVLAATNLP WELDAAMLRR LEKRILVPLP DPEARRGMFE MLLPSQPGDE
301: PLPHDVLVEK SEGYSGSDIR ILCKEAAMQP LRRTLASLED TEEIVPEDEL PKVGPILPED IDRALSNTRP SAHLHAHLYD KFNDDYGSQI IK

Best Arabidopsis Sequence Match ( AT2G34560.2 )
(BLAST)

001: MATDEPSQTR WSFLEFKTFY DAKFGRKKLP EEDVSNKDQP EDGSSNGNNG DVNNNSSPVT NQDGNTALAN GNVIREKPKK SMFPPFESAE TRTLAESLSR
101: DIIRGNPNIK WESIKGLENA KKLLKEAVVM PIKYPTYFNG LLTPWKGILL FGPPGTGKTM LAKAVATECN TTFFNISASS VVSKWRGDSE KLIRVLFDLA
201: RHHAPSTIFL DEIDAIISQR GGEGRSEHEA SRRLKTELLI QMDGLQKTNE LVFVLAATNL PWELDAAMLR RLEKRILVPL PDPEARRGMF EMLIPSQPGD
301: EPLPHDVLVE KSEGYSGSDI RILCKEAAMQ PLRRTLAILE DREDVVPEDE LPKIGPILPE DIDRALSNTR PSAHLHAHLY DKFNDDYGSQ ILK

Arabidopsis Description

AT2G34560 protein [Source:UniProtKB/TrEMBL;Acc:B9DGC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.