Factsheet for VIT_09s0002g04600.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23467	Soybean	cytosol	45.73	81.25
KRH09851	Soybean	cytosol, mitochondrion, plastid	77.39	77.0
VIT_11s0016g04020.t01	Wine grape	cytosol	66.83	76.88
GSMUA_Achr6P02970_001	Banana	cytosol	73.37	73.0
GSMUA_Achr5P23540_001	Banana	endoplasmic reticulum	77.39	66.38
KXG20675	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	64.82	64.5
TraesCS7B01G345100.1	Wheat	cytosol	64.82	62.32
Os06t0687100-01	Rice	cytosol	62.31	62.0
TraesCS7D01G433800.1	Wheat	cytosol	63.82	61.06
HORVU1Hr1G013720.3	Barley	cytosol, mitochondrion, nucleus	56.78	55.66
HORVU2Hr1G027490.2	Barley	cytosol, mitochondrion, nucleus	52.26	55.32
HORVU7Hr1G101140.7	Barley	mitochondrion	56.78	52.07
VIT_13s0019g04680.t01	Wine grape	cytosol	52.26	52.0
VIT_04s0079g00760.t01	Wine grape	cytosol	59.8	51.97
VIT_02s0012g00710.t01	Wine grape	cytosol	31.66	35.2
VIT_00s0665g00040.t01	Wine grape	extracellular	31.16	34.83
VIT_15s0021g00640.t01	Wine grape	cytosol	31.16	34.64
VIT_02s0012g00790.t01	Wine grape	cytosol	11.56	19.83

Protein Annotations

EntrezGene:100263448	wikigene:100263448	MapMan:22.8.1.6	Gene3D:3.40.50.300	ProteinID:CBI36152	ProteinID:CBI36152.3
UniProt:D7U0K6	EMBL:FN596494	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0016787	GO:GO:0030139	EntrezGene:LOC100263448	wikigene:LOC100263448	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF825	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGR:TC52009	TIGRFAMs:TIGR00231	UniParc:UPI0001BE4877	ArrayExpress:VIT_09s0002g04600	EnsemblPlantsGene:VIT_09s0002g04600	EnsemblPlants:VIT_09s0002g04600.t01
RefSeq:XP_002284702	RefSeq:XP_002284702.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:-:4169964..4173537

Molecular Weight (calculated)

22306.7 Da

IEP (calculated)

8.055

GRAVY (calculated)

-0.278

Length

199 amino acids

Sequence
(BLAST)

001: MARPSNKNIQ AKLVLVGDMG TGKTSLVLRF VKGQFFEHQE PTIGAAFFTQ LLSLNEATVK FDIWDTAGQE RYHSLAPMYY RGAAAAVVVY DISNVDTFVR
101: AKKWVQELQK QGNKNLVMAL VANKCDLESK REVNTQEGEK LSEENGMFFI ETSAKTSLNI NELFYEIAKR LAIAQPSQPS GMNLHETENS GRRLFCCSV

Best Arabidopsis Sequence Match ( AT5G45130.1 )
(BLAST)

001: MASSGNKNIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DITNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKADLLDA RKVSAEEAEI YAQENSLFFM ETSAKTATNV KDIFYEIAKR LPRVQPAENP TGMVLPNGPG ATAVSSSCCA

Arabidopsis Description

ATRAB5ARAB homolog 1 [Source:TAIR;Acc:AT5G45130]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.