Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G068700.1 | Wheat | cytosol | 78.46 | 90.67 |
| TraesCS4A01G245500.1 | Wheat | cytosol | 78.46 | 90.67 |
| HORVU4Hr1G011670.1 | Barley | vacuole | 77.69 | 89.78 |
| Os03t0626800-01 | Rice | cytosol | 76.54 | 88.44 |
| Zm00001d033295_P001 | Maize | cytosol | 74.62 | 86.22 |
| GSMUA_Achr9P12840_001 | Banana | cytosol | 73.85 | 84.96 |
| TraesCS5B01G071500.1 | Wheat | cytosol | 73.46 | 84.89 |
| Solyc07g065820.2.1 | Tomato | cytosol | 70.38 | 83.56 |
| KRH46425 | Soybean | endoplasmic reticulum | 72.31 | 83.19 |
| KRG98442 | Soybean | cytosol | 72.31 | 83.19 |
| PGSC0003DMT400057342 | Potato | cytosol, extracellular | 70.0 | 83.11 |
| Solyc12g015870.1.1 | Tomato | cytosol | 71.15 | 82.59 |
| PGSC0003DMT400076653 | Potato | cytosol | 71.15 | 82.59 |
| PGSC0003DMT400037245 | Potato | cytosol | 69.62 | 81.53 |
| Bra028949.1-P | Field mustard | cytosol | 68.85 | 81.36 |
| CDX89324 | Canola | cytosol | 70.0 | 80.53 |
| CDY42728 | Canola | cytosol | 70.0 | 80.53 |
| CDX92814 | Canola | cytosol | 70.0 | 80.53 |
| CDX94315 | Canola | cytosol | 70.0 | 80.53 |
| CDY64981 | Canola | cytosol | 69.62 | 80.09 |
| Bra035598.1-P | Field mustard | cytosol | 69.62 | 80.09 |
| AT5G55990.1 | Thale cress | cytosol, extracellular | 69.62 | 80.09 |
| CDY06547 | Canola | cytosol | 69.62 | 80.09 |
| Bra026421.1-P | Field mustard | cytosol | 66.54 | 79.36 |
| AT4G26570.2 | Thale cress | cytosol | 69.62 | 78.7 |
| TraesCS5B01G124300.1 | Wheat | cytosol | 67.69 | 77.88 |
| CDY36774 | Canola | cytosol | 69.62 | 76.05 |
| CDY11963 | Canola | cytosol | 69.23 | 75.63 |
| CDY67196 | Canola | cytosol | 18.46 | 68.57 |
| TraesCS1B01G229300.1 | Wheat | cytosol | 48.46 | 58.6 |
| TraesCS4B01G379200.1 | Wheat | cytosol | 45.0 | 57.64 |
| CDX89325 | Canola | plastid | 58.08 | 54.91 |
| Bra026422.1-P | Field mustard | cytosol, plastid | 51.15 | 53.2 |
| CDX94316 | Canola | plastid | 53.85 | 50.72 |
| TraesCS1B01G370900.1 | Wheat | mitochondrion | 41.54 | 49.54 |
| TraesCS1B01G272000.1 | Wheat | cytosol | 42.31 | 49.11 |
| TraesCS1B01G357200.1 | Wheat | cytosol | 40.38 | 48.84 |
| TraesCS1B01G370500.1 | Wheat | cytosol | 41.54 | 48.65 |
| TraesCS1B01G370800.1 | Wheat | cytosol | 39.62 | 46.4 |
| TraesCS3B01G235500.1 | Wheat | cytosol | 47.31 | 42.71 |
| TraesCS3B01G064500.2 | Wheat | cytosol, golgi, mitochondrion | 46.54 | 40.88 |
| TraesCS1B01G370600.1 | Wheat | nucleus | 22.69 | 40.14 |
| VIT_00s0194g00040.t01 | Wine grape | cytosol | 10.0 | 6.42 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G069900.1 | EnsemblPlantsGene:TraesCS4B01G069900 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR23056 | PANTHER:PTHR23056:SF57 | PFAM:PF13499 |
| PFAM:PF13833 | PFscan:PS50222 | PRINTS:PR00450 | SEG:seg | SMART:SM00054 | SUPFAM:SSF47473 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:63994499..63998289
Molecular Weight (calculated)
29505.4 Da
IEP (calculated)
5.805
GRAVY (calculated)
-0.226
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHCLEGVRH LCAVLLNLKC CDIDLKQPKG LEDPEVLARE TVFSVSEVEA LYELFKKISS AVIDDGLINK EEFQLALFKT SKKESLFADR VFDLFDTKHN
101: GILGFEEFAR ALSVFHPSAA PDEKIDFSFQ LYDLKQQGFI ERQEVKQMVV ATLAESGMNL SDEVIESIID KTFEEADTKH DGKIDKEEWR NLVLRHPSLL
201: KNMTLQYLKC DYEVLSSISV SSSTKGVRSS SGFKGDILEG HHHHISKLCV PFSGRRYIKS
101: GILGFEEFAR ALSVFHPSAA PDEKIDFSFQ LYDLKQQGFI ERQEVKQMVV ATLAESGMNL SDEVIESIID KTFEEADTKH DGKIDKEEWR NLVLRHPSLL
201: KNMTLQYLKC DYEVLSSISV SSSTKGVRSS SGFKGDILEG HHHHISKLCV PFSGRRYIKS
001: MMMQCLDGLK HLALILLTCC DADPPKVRQN PKDVARGTVF TVNEIEALYE LFKSISKNGL IDKEQFQLVL FKMNTTRSLF ADRVFDLFDT KNTGILDFEA
101: FARSLSVFHP NAKFEDKIEF SFKLYDLNQQ GYIKRQEVKQ MVVRTLAESG MNLSDHVIES IIDKTFEEAD TKLDGKIDKE EWRSLVLRHP SLLQNMSLQH
201: LKDVTKTFPN FVFHTIVTDT PSELDG
101: FARSLSVFHP NAKFEDKIEF SFKLYDLNQQ GYIKRQEVKQ MVVRTLAESG MNLSDHVIES IIDKTFEEAD TKLDGKIDKE EWRSLVLRHP SLLQNMSLQH
201: LKDVTKTFPN FVFHTIVTDT PSELDG
Arabidopsis Description
CBL6Calcineurin B-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5P6]
SUBAcon: [extracellular,cytosol]
SUBAcon: [extracellular,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.