CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03685
KRH20252

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26560.1	KRH03685	AT5G35410.1	11402167
AT4G26560.1	KRH20252	AT5G35410.1	11402167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51220	Soybean	endoplasmic reticulum	99.11	99.11
VIT_00s1569g00020.t01	Wine grape	cytosol	80.09	98.37
KRH46425	Soybean	endoplasmic reticulum	92.92	92.92
KRG98442	Soybean	cytosol	92.48	92.48
KRH36643	Soybean	cytosol	85.84	85.84
GSMUA_AchrUn_...	Banana	cytosol	81.86	81.86
AT4G26560.1	Thale cress	nucleus	60.62	64.02
KRH57533	Soybean	mitochondrion	58.85	62.44
KRH28207	Soybean	cytosol	56.64	60.38
KRH04244	Soybean	cytosol	55.31	57.08
KRH53498	Soybean	cytosol	53.54	54.26
KRH64445	Soybean	cytosol	53.1	53.81
KRH60052	Soybean	cytosol	52.65	51.74
KRH41326	Soybean	cytosol	53.1	51.06
KRH47134	Soybean	cytosol	55.75	47.91
KRH44162	Soybean	cytosol, extracellular	54.87	46.79
KRH05482	Soybean	cytosol, plasma membrane, plastid	52.65	46.12

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100791045	MapMan:35.1	EMBL:ACUP02010292	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom
EnsemblPlantsGene:GLYMA_17G004400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	UniProt:K7MJ94
EnsemblPlants:KRH01928	ProteinID:KRH01928	ProteinID:KRH01928.1	ProteinID:KRH01929.1	PFAM:PF13499	PFAM:PF13833
PRINTS:PR00450	PFscan:PS50222	PANTHER:PTHR23056	PANTHER:PTHR23056:SF51	SMART:SM00054	SUPFAM:SSF47473
UniParc:UPI000233DF8B	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:434854..441609

Molecular Weight (calculated)

25792.6 Da

IEP (calculated)

4.443

GRAVY (calculated)

-0.253

Length

226 amino acids

Sequence
(BLAST)

001: MVQCLDGLKH LCAALVNCCD ADSSKQPTGL ENPEVLARET VFSVSEIEAL YELFKKISSA VIDDGLINKE EFQLALFKTN KKESLFADRV FDLFDTKHNG
101: ILDFEEFARA LSVFHPNAPI DDKIEFSFQL YDLKQQGFIE RQEVKQMVVA TLAESGMNLS DDVIESIIDK TFEEADTKHD GKIDKEEWRN LVLRHPSLLK
201: NMTLQYLKDI TTTFPSFVFH SQVDDT

Best Arabidopsis Sequence Match ( AT4G16350.2 )
(BLAST)

001: MMMQCLDGLK HLALILLTCC DADPPKVRQN PKDVARGTVF TVNEIEALYE LFKSISKNGL IDKEQFQLVL FKMNTTRSLF ADRVFDLFDT KNTGILDFEA
101: FARSLSVFHP NAKFEDKIEF SFKLYDLNQQ GYIKRQEVKQ MVVRTLAESG MNLSDHVIES IIDKTFEEAD TKLDGKIDKE EWRSLVLRHP SLLQNMSLQH
201: LKDVTKTFPN FVFHTIVTDT PSELDG

Arabidopsis Description

CBL6Calcineurin B-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5P6]
SUBAcon: [extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.