Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26560.1 | GSMUA_Achr10P... | AT5G35410.1 | 11402167 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s1569g00020.t01 | Wine grape | cytosol | 79.2 | 97.28 |
| GSMUA_Achr9P12840_001 | Banana | cytosol | 83.19 | 83.19 |
| KRH01928 | Soybean | cytosol | 81.86 | 81.86 |
| KRH51220 | Soybean | endoplasmic reticulum | 81.42 | 81.42 |
| GSMUA_Achr4P09270_001 | Banana | cytosol | 80.53 | 80.53 |
| KRH36643 | Soybean | cytosol | 73.45 | 73.45 |
| AT4G26560.1 | Thale cress | nucleus | 60.62 | 64.02 |
| GSMUA_Achr4P30070_001 | Banana | cytosol | 57.08 | 60.56 |
| GSMUA_AchrUn_... | Banana | cytosol | 54.42 | 57.75 |
| GSMUA_Achr4P26350_001 | Banana | cytosol | 52.65 | 55.87 |
| GSMUA_Achr1P13790_001 | Banana | cytosol | 49.12 | 51.39 |
| GSMUA_Achr4P08200_001 | Banana | cytosol | 49.56 | 51.14 |
| GSMUA_Achr1P13780_001 | Banana | cytosol | 43.81 | 50.77 |
| GSMUA_Achr3P03340_001 | Banana | cytosol | 46.9 | 50.0 |
| GSMUA_Achr3P32370_001 | Banana | cytosol | 50.88 | 43.56 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP16790_001 | EnsemblPlants:GSMUA_AchrUn_randomT16790_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG16790_001 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR23056 | PANTHER:PTHR23056:SF51 |
| PFAM:PF13499 | PFAM:PF13833 | PFscan:PS50222 | PRINTS:PR00450 | SEG:seg | SMART:SM00054 |
| SUPFAM:SSF47473 | UniParc:UPI00029572BC | UniProt:M0U9T8 | MapMan:35.1 | : | : |
Description
Calcineurin B-like protein 3 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG16790_001]
Coordinates
chrchrUn_random:-:78767190..78777829
Molecular Weight (calculated)
26097.9 Da
IEP (calculated)
4.558
GRAVY (calculated)
-0.365
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MDITPCGSND DRNVVDVNDL RKSEMYGKLF LYNVERQIKS GFSVSEIEAL YELFKKISSA VIDDGLINKE EFQLALFKTN KKESLFADRV FDLFDTKHNG
101: ILGFEEFARA LSVFHPNAPI DDKIEFSFQL YDLKQQGFIE RQEVKQMVVA TLAESGMNLS DEVIESIIDK TFEEADTKHD GRIDKEEWRS LVLRHPSLLK
201: NMTLQYLKDI TTTFPSFVFH SQVDDT
101: ILGFEEFARA LSVFHPNAPI DDKIEFSFQL YDLKQQGFIE RQEVKQMVVA TLAESGMNLS DEVIESIIDK TFEEADTKHD GRIDKEEWRS LVLRHPSLLK
201: NMTLQYLKDI TTTFPSFVFH SQVDDT
001: MSQCIDGFKH VCSSFFRCFD IDIYKQSGGL GDPELLARET VFSVSEIEAL YELFKKISSA VIDDGLINKE EFQLALFKTN KKESLFADRV FDLFDTKHNG
101: ILGFEEFARA LSVFHPNAPI EDKIDFSFQL YDLKQQGFIE RQEVKQMVVA TLAESGMNLS DEIIESIIDK TFEEADTKHD GRIDKEEWRT LVLRHPSLLK
201: NMTLQYLKDI TTTFPSFVFH SQVEDT
101: ILGFEEFARA LSVFHPNAPI EDKIDFSFQL YDLKQQGFIE RQEVKQMVVA TLAESGMNLS DEIIESIIDK TFEEADTKHD GRIDKEEWRT LVLRHPSLLK
201: NMTLQYLKDI TTTFPSFVFH SQVEDT
Arabidopsis Description
ATCBL3calcineurin B-like 3 [Source:TAIR;Acc:AT4G26570]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.