Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- plasma membrane 1
- plastid 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400020463 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G50335.1 | PGSC0003DMT400020463 | AT2G24020.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g110990.1.1 | Tomato | cytosol, peroxisome, plastid | 85.92 | 93.85 |
| PGSC0003DMT400069720 | Potato | cytosol | 73.24 | 77.61 |
| KRH63723 | Soybean | extracellular | 50.7 | 57.14 |
| KRH03911 | Soybean | cytosol, nucleus, plastid | 52.11 | 53.62 |
| KRH57195 | Soybean | cytosol, mitochondrion, nucleus | 50.7 | 52.17 |
| VIT_17s0000g10370.t01 | Wine grape | cytosol, mitochondrion, nucleus | 50.7 | 51.43 |
| AT5G50335.1 | Thale cress | nucleus | 46.48 | 44.59 |
| Bra037927.1-P | Field mustard | nucleus | 40.85 | 39.19 |
| CDY05810 | Canola | nucleus | 40.85 | 39.19 |
| CDY69596 | Canola | nucleus | 40.85 | 39.19 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400039555 | EnsemblPlantsGene:PGSC0003DMG400015301 | PANTHER:PTHR38398 | PGSC:PGSC0003DMG400015301 | SEG:seg | UniParc:UPI00029506AE |
| UniProt:M1B8G6 | MapMan:35.2 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400015301]
Coordinates
chr3:-:50568234..50568746
Molecular Weight (calculated)
7748.4 Da
IEP (calculated)
9.442
GRAVY (calculated)
-0.287
Length
71 amino acids
Sequence
(BLAST)
(BLAST)
1: MVSRVEATMK IRQQTEVKNS SYMIMQCNKG KTNKFKRSSS NVEEDGASAA ILLLACIACT TTTTTTTSSH L
1: MVCRAEEAMK QRGIIKRCKE DDRHQKKKMQ SITNCNKEKS CRFKRSTSNL DNDGASSAIF LLACIACSSF SYHL
Arabidopsis Description
At5g50335 [Source:UniProtKB/TrEMBL;Acc:Q8LEB7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.