Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400020463 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G50335.1 | PGSC0003DMT400020463 | AT2G24020.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g071930.1.1 | Tomato | cytosol | 98.51 | 98.51 |
| PGSC0003DMT400039555 | Potato | nucleus, plasma membrane, plastid | 77.61 | 73.24 |
| KRH03911 | Soybean | cytosol, nucleus, plastid | 65.67 | 63.77 |
| KRH57195 | Soybean | cytosol, mitochondrion, nucleus | 65.67 | 63.77 |
| VIT_17s0000g10370.t01 | Wine grape | cytosol, mitochondrion, nucleus | 64.18 | 61.43 |
| KRH63723 | Soybean | extracellular | 55.22 | 58.73 |
| AT5G50335.1 | Thale cress | nucleus | 55.22 | 50.0 |
| Bra037927.1-P | Field mustard | nucleus | 49.25 | 44.59 |
| CDY05810 | Canola | nucleus | 49.25 | 44.59 |
| CDY69596 | Canola | nucleus | 49.25 | 44.59 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400069720 | EnsemblPlantsGene:PGSC0003DMG400027111 | EntrezGene:102605400 | PANTHER:PTHR38398 | PGSC:PGSC0003DMG400027111 | RefSeq:XP_006347400.1 |
| SEG:seg | UniParc:UPI0002956EF2 | UniProt:M1CL03 | MapMan:35.2 | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400027111]
Coordinates
chr6:+:52800057..52800729
Molecular Weight (calculated)
7525.1 Da
IEP (calculated)
9.420
GRAVY (calculated)
-0.531
Length
67 amino acids
Sequence
(BLAST)
(BLAST)
1: MVSRVEEAMK IRQQQEVKNY QVQKQLMQCN KGKTNKFKRS SSNVEEDGAS SAILLLACIA CASSHHL
1: MVCRAEEAMK QRGIIKRCKE DDRHQKKKMQ SITNCNKEKS CRFKRSTSNL DNDGASSAIF LLACIACSSF SYHL
Arabidopsis Description
At5g50335 [Source:UniProtKB/TrEMBL;Acc:Q8LEB7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.