Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G50335.1 | KRH26162 | AT2G24020.1 | 21798944 |
| AT5G50335.1 | KRH55034 | AT2G24020.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH03911 | Soybean | cytosol, nucleus, plastid | 66.67 | 60.87 |
| KRH57195 | Soybean | cytosol, mitochondrion, nucleus | 65.08 | 59.42 |
| PGSC0003DMT400069720 | Potato | cytosol | 58.73 | 55.22 |
| Solyc06g071930.1.1 | Tomato | cytosol | 58.73 | 55.22 |
| Solyc03g110990.1.1 | Tomato | cytosol, peroxisome, plastid | 55.56 | 53.85 |
| PGSC0003DMT400039555 | Potato | nucleus, plasma membrane, plastid | 57.14 | 50.7 |
| AT5G50335.1 | Thale cress | nucleus | 49.21 | 41.89 |
| Bra037927.1-P | Field mustard | nucleus | 44.44 | 37.84 |
| CDY05810 | Canola | nucleus | 44.44 | 37.84 |
| CDY69596 | Canola | nucleus | 44.44 | 37.84 |
Protein Annotations
| EMBL:ACUP02002708 | EnsemblPlants:KRH63723 | EnsemblPlantsGene:GLYMA_04G193300 | PANTHER:PTHR38398 | ProteinID:KRH63723 | ProteinID:KRH63723.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI00054A3AAC | UniProt:A0A0R0KGP8 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr4:-:46486861..46488292
Molecular Weight (calculated)
6965.6 Da
IEP (calculated)
10.022
GRAVY (calculated)
-0.259
Length
63 amino acids
Sequence
(BLAST)
(BLAST)
1: MVSKVEEAKK RNRIKKQIQC NKGKIGMFKR SSSNMEEDGA SFAILLLACI ALCTFQPANT CPS
1: MVCRAEEAMK QRGIIKRCKE DDRHQKKKMQ SITNCNKEKS CRFKRSTSNL DNDGASSAIF LLACIACSSF SYHL
Arabidopsis Description
At5g50335 [Source:UniProtKB/TrEMBL;Acc:Q8LEB7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.