Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037927.1-P | Field mustard | nucleus | 79.73 | 79.73 |
| CDY05810 | Canola | nucleus | 79.73 | 79.73 |
| CDY69596 | Canola | nucleus | 79.73 | 79.73 |
| PGSC0003DMT400069720 | Potato | cytosol | 50.0 | 55.22 |
| Solyc06g071930.1.1 | Tomato | cytosol | 48.65 | 53.73 |
| VIT_17s0000g10370.t01 | Wine grape | cytosol, mitochondrion, nucleus | 47.3 | 50.0 |
| KRH03911 | Soybean | cytosol, nucleus, plastid | 45.95 | 49.28 |
| KRH63723 | Soybean | extracellular | 41.89 | 49.21 |
| Solyc03g110990.1.1 | Tomato | cytosol, peroxisome, plastid | 41.89 | 47.69 |
| PGSC0003DMT400039555 | Potato | nucleus, plasma membrane, plastid | 44.59 | 46.48 |
| KRH57195 | Soybean | cytosol, mitochondrion, nucleus | 43.24 | 46.38 |
Protein Annotations
| MapMan:35.2 | EntrezGene:835100 | UniProt:A0A178UG35 | ProteinID:AED95928.1 | EMBL:AK118566 | ArrayExpress:AT5G50335 |
| EnsemblPlantsGene:AT5G50335 | RefSeq:AT5G50335 | TAIR:AT5G50335 | RefSeq:AT5G50335-TAIR-G | EnsemblPlants:AT5G50335.1 | TAIR:AT5G50335.1 |
| EMBL:AY085514 | Unigene:At.29737 | EMBL:BT004646 | GO:GO:0008150 | RefSeq:NP_568726.1 | ProteinID:OAO92224.1 |
| PO:PO:0000013 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001185 | PO:PO:0007103 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR38398 | UniProt:Q8LEB7 | UniParc:UPI000000C402 | : | : | : |
Description
At5g50335 [Source:UniProtKB/TrEMBL;Acc:Q8LEB7]
Coordinates
chr5:-:20489033..20489727
Molecular Weight (calculated)
8462.2 Da
IEP (calculated)
9.509
GRAVY (calculated)
-0.674
Length
74 amino acids
Sequence
(BLAST)
(BLAST)
1: MVCRAEEAMK QRGIIKRCKE DDRHQKKKMQ SITNCNKEKS CRFKRSTSNL DNDGASSAIF LLACIACSSF SYHL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.