Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G50335.1 | KRH26162 | AT2G24020.1 | 21798944 |
| AT5G50335.1 | KRH55034 | AT2G24020.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH03911 | Soybean | cytosol, nucleus, plastid | 97.1 | 97.1 |
| VIT_17s0000g10370.t01 | Wine grape | cytosol, mitochondrion, nucleus | 76.81 | 75.71 |
| PGSC0003DMT400069720 | Potato | cytosol | 63.77 | 65.67 |
| Solyc06g071930.1.1 | Tomato | cytosol | 63.77 | 65.67 |
| KRH63723 | Soybean | extracellular | 59.42 | 65.08 |
| Solyc03g110990.1.1 | Tomato | cytosol, peroxisome, plastid | 52.17 | 55.38 |
| PGSC0003DMT400039555 | Potato | nucleus, plasma membrane, plastid | 52.17 | 50.7 |
| AT5G50335.1 | Thale cress | nucleus | 46.38 | 43.24 |
| Bra037927.1-P | Field mustard | nucleus | 46.38 | 43.24 |
| CDY05810 | Canola | nucleus | 46.38 | 43.24 |
| CDY69596 | Canola | nucleus | 46.38 | 43.24 |
Protein Annotations
| EMBL:ACUP02002815 | EnsemblPlants:KRH57195 | EnsemblPlantsGene:GLYMA_05G0454002 | PANTHER:PTHR38398 | ProteinID:KRH57195 | ProteinID:KRH57195.1 |
| SEG:seg | UniParc:UPI000233A88C | UniProt:I1K083 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr5:-:4030513..4030964
Molecular Weight (calculated)
7679.2 Da
IEP (calculated)
10.031
GRAVY (calculated)
-0.771
Length
69 amino acids
Sequence
(BLAST)
(BLAST)
1: MVSKVEEAMK RNKQMQPQAQ NQQQQLQKQI QCNKGKAGKF KRSSSNLEED GASSAILFLA CIAYAPSYA
1: MVCRAEEAMK QRGIIKRCKE DDRHQKKKMQ SITNCNKEKS CRFKRSTSNL DNDGASSAIF LLACIACSSF SYHL
Arabidopsis Description
At5g50335 [Source:UniProtKB/TrEMBL;Acc:Q8LEB7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.