Factsheet for PGSC0003DMT400021798

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g054130.2.1	Tomato	cytosol	97.07	97.07
PGSC0003DMT400034558	Potato	cytosol	85.92	86.18
VIT_10s0405g00020.t01	Wine grape	cytosol	84.46	84.71
Bra022139.1-P	Field mustard	cytosol	81.82	81.34
CDY28923	Canola	cytosol, mitochondrion	81.82	81.34
CDY40559	Canola	cytosol	81.52	81.05
KRH11537	Soybean	cytosol	78.89	80.54
AT5G47540.1	Thale cress	cytosol	80.94	80.47
KRH36554	Soybean	cytosol	78.59	80.0
Bra024936.1-P	Field mustard	cytosol, mitochondrion	77.71	79.34
GSMUA_AchrUn_...	Banana	cytosol	40.47	79.31
AT4G17270.1	Thale cress	mitochondrion	79.77	79.3
CDY17728	Canola	cytosol, mitochondrion	77.42	79.04
CDX77775	Canola	cytosol, mitochondrion	78.3	78.53
KRH51169	Soybean	cytosol	18.18	78.48
CDX90480	Canola	cytosol	78.01	78.47
CDY09635	Canola	cytosol, mitochondrion	78.01	78.47
Bra012670.1-P	Field mustard	cytosol	78.01	78.47
KRH01988	Soybean	endoplasmic reticulum, extracellular	76.25	78.08
Zm00001d021954_P003	Maize	plasma membrane	75.66	76.79
TraesCS2B01G216100.1	Wheat	cytosol	75.66	76.56
TraesCS2D01G197000.1	Wheat	golgi	75.66	76.56
TraesCS2A01G191000.1	Wheat	cytosol	75.37	76.26
HORVU2Hr1G036030.1	Barley	cytosol	74.78	75.67
Os07t0585100-01	Rice	plasma membrane	74.49	75.6
Zm00001d006710_P004	Maize	mitochondrion	73.9	75.0
GSMUA_Achr1P22810_001	Banana	cytosol	72.14	73.21
CDY42976	Canola	cytosol	36.66	73.1
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	34.02	71.6
Bra026241.1-P	Field mustard	mitochondrion	56.01	68.7
CDY25960	Canola	cytosol	73.9	67.74
Bra014431.1-P	Field mustard	cytosol	26.98	66.67
CDY41055	Canola	mitochondrion	73.61	64.86
Bra017480.1-P	Field mustard	cytosol	73.31	64.77
PGSC0003DMT400057131	Potato	plastid	70.38	58.39
CDY42975	Canola	mitochondrion	29.91	57.3
Os03t0172200-01	Rice	plasma membrane	59.82	56.98
Zm00001d027862_P002	Maize	plastid	58.65	54.2
TraesCS4A01G015400.2	Wheat	plastid	56.89	52.72
TraesCS4D01G287400.4	Wheat	plastid	55.72	51.63
TraesCS4B01G288500.2	Wheat	plastid	55.13	51.09
PGSC0003DMT400033238	Potato	cytosol	41.94	41.69
OQU85418	Sorghum	cytosol	18.77	29.22

Protein Annotations

EnsemblPlants:PGSC0003DMT400021798	EnsemblPlantsGene:PGSC0003DMG400008459	EntrezGene:102592104	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:IPR011989	InterPro:Mo25	PANTHER:PTHR10182	PANTHER:PTHR10182:SF12
PFAM:PF08569	PGSC:PGSC0003DMG400008459	RefSeq:XP_006365852.1	SUPFAM:SSF48371	UniParc:UPI000296A32E	UniProt:M1AFQ5
MapMan:35.1	:	:	:	:	:

Description

Calcium-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008459]

Coordinates

chr5:+:49778084..49784845

Molecular Weight (calculated)

39555.8 Da

IEP (calculated)

8.790

GRAVY (calculated)

-0.356

Length

341 amino acids

Sequence
(BLAST)

001: MKGLLFKSKP KTPVELVRQT RDLLIYTQRN SDIRESKREE KMMELSKTMR DLKCVLYGNG QSEPVSDACS QLTQEFFRED TLRLLINILP KLNLEARKDA
101: TQVVANLQRQ QVQSRLIACH YLEANIDLMD ILVTGYENTE MALHYGTMLR ECIRHQSVAR YVLESEHVKK FFDYIQLPNF DIAADAAATF KELLTRHKST
201: LAEFLSKNYD WFFAEYNSKL LESSNYITRR QAIKLLGDIL LDRSNASVMT RYVSSRDNLR ILMNLLRESS KSIQIEAFHV FKLFAANKNK PSDIISILVA
301: NRSKLLRLFA DFKTDKEDEQ FEADKAQVVK EIAALETKEL S

Best Arabidopsis Sequence Match ( AT5G47540.1 )
(BLAST)

001: MKGLFKSKPR TPADLVRQTR DLLLFSDRST SLPDLRDSKR DEKMAELSRN IRDMKSILYG NSEAEPVAEA CAQLTQEFFK EDTLRLLITC LPKLNLETRK
101: DATQVVANLQ RQQVNSRLIA SDYLEANIDL MDVLIEGFEN TDMALHYGAM FRECIRHQIV AKYVLESDHV KKFFDYIQLP NFDIAADAAA TFKELLTRHK
201: STVAEFLTKN EDWFFADYNS KLLESSNYIT RRQAIKLLGD ILLDRSNSAV MTKYVSSRDN LRILMNLLRE SSKSIQIEAF HVFKLFAANQ NKPADIVNIL
301: VANRSKLLRL LADLKPDKED ERFEADKSQV LREIAALEPR DLA

Arabidopsis Description

At5g47540 [Source:UniProtKB/TrEMBL;Acc:B3LFB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.