Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40559 | Canola | cytosol | 95.04 | 95.04 |
| Bra022139.1-P | Field mustard | cytosol | 95.04 | 95.04 |
| CDY28923 | Canola | cytosol, mitochondrion | 94.75 | 94.75 |
| Bra024936.1-P | Field mustard | cytosol, mitochondrion | 91.55 | 94.01 |
| CDY17728 | Canola | cytosol, mitochondrion | 91.25 | 93.71 |
| CDX77775 | Canola | cytosol, mitochondrion | 92.13 | 92.94 |
| AT4G17270.1 | Thale cress | mitochondrion | 87.17 | 87.17 |
| VIT_10s0405g00020.t01 | Wine grape | cytosol | 85.13 | 85.88 |
| KRH11537 | Soybean | cytosol | 82.22 | 84.43 |
| KRH36554 | Soybean | cytosol | 82.22 | 84.18 |
| Bra014431.1-P | Field mustard | cytosol | 33.82 | 84.06 |
| PGSC0003DMT400034558 | Potato | cytosol | 81.34 | 82.06 |
| Solyc11g012400.1.1 | Tomato | cytosol | 80.76 | 81.47 |
| Solyc05g054130.2.1 | Tomato | cytosol | 80.76 | 81.23 |
| PGSC0003DMT400021798 | Potato | cytosol | 80.47 | 80.94 |
| KRH01988 | Soybean | endoplasmic reticulum, extracellular | 78.13 | 80.48 |
| CDY25960 | Canola | cytosol | 86.59 | 79.84 |
| KRH51169 | Soybean | cytosol | 18.37 | 79.75 |
| GSMUA_AchrUn_... | Banana | cytosol | 39.07 | 77.01 |
| TraesCS2D01G197000.1 | Wheat | golgi | 75.22 | 76.56 |
| TraesCS2B01G216100.1 | Wheat | cytosol | 75.22 | 76.56 |
| CDY41055 | Canola | mitochondrion | 86.01 | 76.23 |
| Os07t0585100-01 | Rice | plasma membrane | 74.64 | 76.19 |
| Bra017480.1-P | Field mustard | cytosol | 85.71 | 76.17 |
| HORVU2Hr1G036030.1 | Barley | cytosol | 74.64 | 75.96 |
| TraesCS2A01G191000.1 | Wheat | cytosol | 74.64 | 75.96 |
| Zm00001d021954_P003 | Maize | plasma membrane | 74.05 | 75.6 |
| GSMUA_Achr1P22810_001 | Banana | cytosol | 73.76 | 75.3 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 35.28 | 74.69 |
| Zm00001d006710_P004 | Maize | mitochondrion | 72.89 | 74.4 |
| AT2G03410.1 | Thale cress | cytosol | 65.01 | 64.08 |
| Os03t0172200-01 | Rice | plasma membrane | 60.35 | 57.82 |
| TraesCS4A01G015400.2 | Wheat | plastid | 57.43 | 53.53 |
| Zm00001d027862_P002 | Maize | plastid | 57.43 | 53.39 |
| TraesCS4D01G287400.4 | Wheat | plastid | 56.85 | 52.99 |
| TraesCS4B01G288500.2 | Wheat | plastid | 56.27 | 52.45 |
| AT5G18940.1 | Thale cress | cytosol | 42.86 | 42.61 |
| OQU85418 | Sorghum | cytosol | 20.12 | 31.51 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:35.1 | EntrezGene:834804 | UniProt:A0A178UDN8 | ProteinID:AED95530.1 | EMBL:AF428296 |
| InterPro:ARM-like | InterPro:ARM-type_fold | ArrayExpress:AT5G47540 | EnsemblPlantsGene:AT5G47540 | RefSeq:AT5G47540 | TAIR:AT5G47540 |
| RefSeq:AT5G47540-TAIR-G | EnsemblPlants:AT5G47540.1 | TAIR:AT5G47540.1 | Unigene:At.7964 | UniProt:B3LFB8 | ProteinID:BAB09080.1 |
| EMBL:BT033107 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008150 | InterPro:IPR011989 | InterPro:Mo25 |
| RefSeq:NP_199565.4 | ProteinID:OAO91730.1 | PFAM:PF08569 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR10182 | PANTHER:PTHR10182:SF12 | UniProt:Q9FGK3 | SUPFAM:SSF48371 | UniParc:UPI0000000D37 |
Description
At5g47540 [Source:UniProtKB/TrEMBL;Acc:B3LFB8]
Coordinates
chr5:-:19283029..19285758
Molecular Weight (calculated)
39459.4 Da
IEP (calculated)
7.052
GRAVY (calculated)
-0.348
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGLFKSKPR TPADLVRQTR DLLLFSDRST SLPDLRDSKR DEKMAELSRN IRDMKSILYG NSEAEPVAEA CAQLTQEFFK EDTLRLLITC LPKLNLETRK
101: DATQVVANLQ RQQVNSRLIA SDYLEANIDL MDVLIEGFEN TDMALHYGAM FRECIRHQIV AKYVLESDHV KKFFDYIQLP NFDIAADAAA TFKELLTRHK
201: STVAEFLTKN EDWFFADYNS KLLESSNYIT RRQAIKLLGD ILLDRSNSAV MTKYVSSRDN LRILMNLLRE SSKSIQIEAF HVFKLFAANQ NKPADIVNIL
301: VANRSKLLRL LADLKPDKED ERFEADKSQV LREIAALEPR DLA
101: DATQVVANLQ RQQVNSRLIA SDYLEANIDL MDVLIEGFEN TDMALHYGAM FRECIRHQIV AKYVLESDHV KKFFDYIQLP NFDIAADAAA TFKELLTRHK
201: STVAEFLTKN EDWFFADYNS KLLESSNYIT RRQAIKLLGD ILLDRSNSAV MTKYVSSRDN LRILMNLLRE SSKSIQIEAF HVFKLFAANQ NKPADIVNIL
301: VANRSKLLRL LADLKPDKED ERFEADKSQV LREIAALEPR DLA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.