CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77775	Canola	cytosol, mitochondrion	81.18	88.82
CDY17728	Canola	cytosol, mitochondrion	79.03	88.02
CDY41055	Canola	mitochondrion	90.59	87.08
AT5G47540.1	Thale cress	cytosol	79.84	86.59
CDY40559	Canola	cytosol	78.49	85.13
CDY28923	Canola	cytosol, mitochondrion	78.23	84.84
CDX90480	Canola	cytosol	71.51	78.47
KRH11537	Soybean	cytosol	70.43	78.44
KRH36554	Soybean	cytosol	70.43	78.21
VIT_10s0405g00020.t01	Wine grape	cytosol	71.24	77.94
CDY09635	Canola	cytosol, mitochondrion	70.97	77.88
Solyc05g054130.2.1	Tomato	cytosol	68.28	74.49
KRH01988	Soybean	endoplasmic reticulum, extracellular	66.67	74.47
Solyc11g012400.1.1	Tomato	cytosol	67.74	74.12
PGSC0003DMT400034558	Potato	cytosol	67.74	74.12
Zm00001d021954_P003	Maize	plasma membrane	66.94	74.11
PGSC0003DMT400021798	Potato	cytosol	67.74	73.9
CDY42976	Canola	cytosol	33.6	73.1
GSMUA_AchrUn_...	Banana	cytosol	34.14	72.99
Zm00001d006710_P004	Maize	mitochondrion	65.86	72.92
GSMUA_Achr1P22810_001	Banana	cytosol	65.59	72.62
Os07t0585100-01	Rice	plasma membrane	65.59	72.62
TraesCS2B01G216100.1	Wheat	cytosol	65.59	72.4
TraesCS2D01G197000.1	Wheat	golgi	65.59	72.4
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	31.18	71.6
HORVU2Hr1G036030.1	Barley	cytosol	64.78	71.51
TraesCS2A01G191000.1	Wheat	cytosol	64.52	71.22
KRH51169	Soybean	cytosol	14.52	68.35
CDY37193	Canola	cytosol	8.87	67.35
CDY42975	Canola	mitochondrion	31.18	65.17
CDY04151	Canola	cytosol	55.38	59.88
Os03t0172200-01	Rice	plasma membrane	53.76	55.87
Zm00001d027862_P002	Maize	plastid	51.34	51.76
TraesCS4A01G015400.2	Wheat	plastid	49.46	50.0
TraesCS4B01G288500.2	Wheat	plastid	48.92	49.46
TraesCS4D01G287400.4	Wheat	plastid	48.92	49.46
CDY45561	Canola	cytosol	55.38	43.46
CDX92571	Canola	cytosol	39.25	42.32
CDY13930	Canola	cytosol	38.98	42.03
OQU85418	Sorghum	cytosol	18.82	31.96

Protein Annotations

EnsemblPlants:CDY25960	EnsemblPlantsGene:GSBRNA2T00033471001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:IPR011989	InterPro:Mo25	PANTHER:PTHR10182	PANTHER:PTHR10182:SF12	PFAM:PF08569
ProteinID:CDY25960	ProteinID:CDY25960.1	SEG:seg	SUPFAM:SSF48371	UniParc:UPI0004EED9A7	UniProt:A0A078GHM7
MapMan:35.1	:	:	:	:	:

Description

BnaC09g20270DBnaC09g20270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHM7]

Coordinates

chrLK032183:+:333439..338374

Molecular Weight (calculated)

42628.4 Da

IEP (calculated)

6.875

GRAVY (calculated)

-0.220

Length

372 amino acids

Sequence
(BLAST)

001: MLNKCDRSKI NLPFHQGREP LTSSGYAAGD PPGLFKSKPR TPVDLVRQTR DLLLYADRSN SSSLPDSKRH EKMAELSRNI RDMKFILYGN SEAEPVAEAC
101: AQLTQEFFRE DTLRLFITCL PILNLETRKD ATQVVANLQR QQVNFKLIAS DYLEANVDLM DVLIQGCENL DMALHYGAMF RECIRHQIVA KYVLESEHVK
201: KFFDYIQLAN FDIAADAAAT FKELLTRHKS TVADFLTNNE EWFFADYNSK LLKSVNYVTR RQAIKLLGDI LLDRSNSAVM TKYVSSMDYL MILMNLLIES
301: SKSIQIEAFH VFKLFVANQN KPAEIVNILV TNRSKLLRLL ADLRPDKEDE RFEADKSQVL REISSLEPLV LA

Best Arabidopsis Sequence Match ( AT5G47540.1 )
(BLAST)

001: MKGLFKSKPR TPADLVRQTR DLLLFSDRST SLPDLRDSKR DEKMAELSRN IRDMKSILYG NSEAEPVAEA CAQLTQEFFK EDTLRLLITC LPKLNLETRK
101: DATQVVANLQ RQQVNSRLIA SDYLEANIDL MDVLIEGFEN TDMALHYGAM FRECIRHQIV AKYVLESDHV KKFFDYIQLP NFDIAADAAA TFKELLTRHK
201: STVAEFLTKN EDWFFADYNS KLLESSNYIT RRQAIKLLGD ILLDRSNSAV MTKYVSSRDN LRILMNLLRE SSKSIQIEAF HVFKLFAANQ NKPADIVNIL
301: VANRSKLLRL LADLKPDKED ERFEADKSQV LREIAALEPR DLA

Arabidopsis Description

At5g47540 [Source:UniProtKB/TrEMBL;Acc:B3LFB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.