CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

extracellular: 25724908
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51169	Soybean	cytosol	22.22	93.67
KRH11537	Soybean	cytosol	82.28	82.04
KRH36554	Soybean	cytosol	81.98	81.49
Bra024936.1-P	Field mustard	cytosol, mitochondrion	80.48	80.24
CDY17728	Canola	cytosol, mitochondrion	80.18	79.94
VIT_10s0405g00020.t01	Wine grape	cytosol	80.18	78.53
CDX77775	Canola	cytosol, mitochondrion	80.18	78.53
Bra022139.1-P	Field mustard	cytosol	80.78	78.43
CDY40559	Canola	cytosol	80.78	78.43
CDY28923	Canola	cytosol, mitochondrion	80.78	78.43
AT5G47540.1	Thale cress	cytosol	80.48	78.13
PGSC0003DMT400034558	Potato	cytosol	78.98	77.35
Solyc11g012400.1.1	Tomato	cytosol	78.68	77.06
GSMUA_AchrUn_...	Banana	cytosol	40.24	77.01
PGSC0003DMT400021798	Potato	cytosol	78.08	76.25
Solyc05g054130.2.1	Tomato	cytosol	77.78	75.95
AT4G17270.1	Thale cress	mitochondrion	76.28	74.05
Bra012670.1-P	Field mustard	cytosol	75.38	74.04
CDX90480	Canola	cytosol	75.38	74.04
GSMUA_Achr1P22810_001	Banana	cytosol	74.47	73.81
CDY09635	Canola	cytosol, mitochondrion	75.08	73.75
Zm00001d021954_P003	Maize	plasma membrane	72.97	72.32
Zm00001d006710_P004	Maize	mitochondrion	72.07	71.43
Os07t0585100-01	Rice	plasma membrane	71.77	71.13
CDY42976	Canola	cytosol	36.34	70.76
TraesCS2A01G191000.1	Wheat	cytosol	71.47	70.62
TraesCS2D01G197000.1	Wheat	golgi	71.17	70.33
TraesCS2B01G216100.1	Wheat	cytosol	71.17	70.33
HORVU2Hr1G036030.1	Barley	cytosol	70.57	69.73
Bra014431.1-P	Field mustard	cytosol	28.83	69.57
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	33.03	67.9
CDY25960	Canola	cytosol	74.47	66.67
Bra026241.1-P	Field mustard	mitochondrion	55.56	66.55
CDY41055	Canola	mitochondrion	75.08	64.6
Bra017480.1-P	Field mustard	cytosol	74.77	64.51
KRH74028	Soybean	cytosol	62.16	58.64
KRH14096	Soybean	cytosol	61.86	58.36
CDY42975	Canola	mitochondrion	30.93	57.87
Os03t0172200-01	Rice	plasma membrane	58.86	54.75
Zm00001d027862_P002	Maize	plastid	55.56	50.14
TraesCS4A01G015400.2	Wheat	plastid	54.35	49.18
TraesCS4D01G287400.4	Wheat	plastid	53.15	48.1
TraesCS4B01G288500.2	Wheat	plastid	52.85	47.83
KRH20946	Soybean	cytosol	41.44	40.71
KRH08140	Soybean	plastid	10.51	36.46
KRH11335	Soybean	extracellular	8.11	29.03
OQU85418	Sorghum	cytosol	17.12	26.03

Protein Annotations

EMBL:ACUP02010293	EnsemblPlants:KRH01988	EnsemblPlantsGene:GLYMA_17G008100	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:IPR011989	InterPro:Mo25	PANTHER:PTHR10182	PANTHER:PTHR10182:SF12
PFAM:PF08569	ProteinID:KRH01988	ProteinID:KRH01988.1	SEG:seg	SUPFAM:SSF48371	UniParc:UPI000233EF15
UniProt:I1MR04	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:674994..679065

Molecular Weight (calculated)

38405.2 Da

IEP (calculated)

7.063

GRAVY (calculated)

-0.356

Length

333 amino acids

Sequence
(BLAST)

001: MKSLFKPKPR TPSDIVKQTR DLLLRLTSRD DDNMPDLTKN LRDLKSILYG NSESEPVPEA CAQLTQEFFA DNTLRLLIQY LPKLNLEARK DATQIVANLQ
101: RQQVQSKLIA SDYLDTNLDL MDVLVSGYEN TDMALHYGAM LRECIRHQIV AKYVLDSPHM KKFFDYIQLP NFDIAADAAA TFKELMTRHK STVADFLSNY
201: YEWFFDEYNS KLLESSNYIT RRQAVKLLGD MLLDRTNSAV MTRYVSSRDN LRILMNLLRE SSKSIQIEAF HVFKLFAANQ KKPADIISIF VANRSKLLRL
301: LGDLKTDKED EQFEADKAQV IKEIAALEPR DLA

Best Arabidopsis Sequence Match ( AT2G03410.1 )
(BLAST)

001: MKGLFKNKSR LPGEIVRQTR DLIALAESEE EETDARNSKR LGICAELCRN IRDLKSILYG NGEAEPVPEA CLLLTQEFFR ADTLRPLIKS IPKLDLEARK
101: DATQIVANLQ KQQVEFRLVA SEYLESNLDV IDSLVEGIDH DHELALHYTG MLKECVRHQV VAKYILESKN LEKFFDYVQL PYFDVATDAS KIFRELLTRH
201: KSTVAEYLAK NYEWFFAEYN TKLLEKGSYF TKRQASKLLG DVLMDRSNSG VMVKYVSSLD NLRIMMNLLR EPTKNIQLEA FHIFKLFVAN ENKPEDIVAI
301: LVANRTKILR LFADLKPEKE DVGFETDKAL VMNEIATLSL LDIKTADR

Arabidopsis Description

MO25-like protein At2g03410 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ77]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.