CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g02410.t01	Wine grape	cytosol	80.24	78.84
AT5G18940.1	Thale cress	cytosol	79.94	78.55
CDY13930	Canola	cytosol	79.35	77.97
Bra002195.1-P	Field mustard	cytosol	79.06	77.68
CDX92571	Canola	cytosol	79.06	77.68
Solyc01g080350.2.1	Tomato	plastid	74.93	74.71
PGSC0003DMT400033238	Potato	cytosol	74.04	73.18
GSMUA_Achr5P27410_001	Banana	cytosol	59.59	69.66
GSMUA_Achr11P...	Banana	cytosol	66.67	68.69
EER97658	Sorghum	mitochondrion	65.49	66.07
TraesCS2D01G142500.1	Wheat	mitochondrion	64.01	64.58
TraesCS2B01G163800.1	Wheat	mitochondrion	64.01	64.58
Os07t0647100-01	Rice	mitochondrion	64.01	64.39
TraesCS2A01G139800.1	Wheat	mitochondrion	63.72	64.29
HORVU2Hr1G024780.11	Barley	cytosol	58.41	63.46
Os03t0359700-01	Rice	plasma membrane	61.36	61.9
TraesCS3B01G378800.1	Wheat	cytosol	57.82	61.44
EER92235	Sorghum	mitochondrion	59.59	60.84
TraesCS3D01G340700.1	Wheat	cytosol	56.93	60.5
KRH11335	Soybean	extracellular	16.52	60.22
TraesCS3A01G347100.1	Wheat	cytosol	56.05	59.56
KRH08140	Soybean	plastid	16.81	59.38
Zm00001d007058_P002	Maize	mitochondrion	62.83	56.35
HORVU3Hr1G088310.1	Barley	cytosol	57.82	50.26
KRH51169	Soybean	cytosol	11.21	48.1
Zm00001d029234_P016	Maize	mitochondrion	49.26	46.91
KRH11537	Soybean	cytosol	42.48	43.11
KRH36554	Soybean	cytosol	42.48	42.99
KRH01988	Soybean	endoplasmic reticulum, extracellular	40.71	41.44
KRH74028	Soybean	cytosol	41.89	40.23
KRH14096	Soybean	cytosol	41.0	39.38

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100815605	MapMan:35.1	EMBL:ACUP02008330	InterPro:ARM-like	InterPro:ARM-type_fold
EMBL:BT097759	UniProt:C6TJB5	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G211500	GO:GO:0003674	GO:GO:0005488
InterPro:IPR011989	EnsemblPlants:KRH20946	ProteinID:KRH20946	ProteinID:KRH20946.1	InterPro:Mo25	PFAM:PF08569
PANTHER:PTHR10182	PANTHER:PTHR10182:SF15	SUPFAM:SSF48371	UniParc:UPI0001B165CB	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:-:32507870..32517052

Molecular Weight (calculated)

39430.0 Da

IEP (calculated)

5.342

GRAVY (calculated)

-0.062

Length

339 amino acids

Sequence
(BLAST)

001: MSFSFFKALR PKTPQEVAKS IKESLMALDT KTVVEVKALE KALEEVEKNF VTMRTMLSGD GESEPNLDQV SQLVEEICKE DVLTLLIHKL PILGWEARKD
101: LVHCWSILLK HKVETNYYCV EYIEQHIELL DFLVVCYDNK DIALSCGIML RECIKFPSLA RYILESASFV LFFKFVELPN FDVASDAFST FKDLLTKHVN
201: VVSEFLTAHY DEFFDLYEKL LTSPNYVTRR QSLKLLSEFL LESPNSQIMK QYILEVRYLK VMMTLLRDSS KNIQLSAFHI FKVFVANPNK PREVKIILSK
301: NQEKLLDLLH NLSPGKGSED EQFEEEKEFI IKEIERLSI

Best Arabidopsis Sequence Match ( AT5G18940.1 )
(BLAST)

001: MSFSFFKPSR PKTPQEVVKA IRDSLMALDT KTVVEVKALE KALEEVEKNF SSLRGILSGD GETEPNADQA VQLALEFCKE DVVSLVIHKL HILGWETRKD
101: LLHCWSILLK QKVGDTYCCV QYFEEHFELL DSLVVCYDNK EIALHCGSML RECIKFPSLA KYILESACFE LFFKFVELPN FDVASDAFST FKDLLTKHDS
201: VVSEFLTSHY TEFFDVYERL LTSSNYVTRR QSLKLLSDFL LEPPNSHIMK KFILEVRYLK VIMTLLKDSS KNIQISAFHI FKIFVANPNK PQEVKIILAR
301: NHEKLLELLH DLSPGKGSED DQFEEEKELI IEEIQKLSGL KNLER

Arabidopsis Description

At5g18940 [Source:UniProtKB/TrEMBL;Acc:Q8L9L9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.