Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002195.1-P | Field mustard | cytosol | 95.07 | 95.07 |
| CDX92571 | Canola | cytosol | 95.07 | 95.07 |
| CDY13930 | Canola | cytosol | 95.07 | 95.07 |
| KRH20946 | Soybean | cytosol | 78.55 | 79.94 |
| VIT_05s0020g02410.t01 | Wine grape | cytosol | 77.68 | 77.68 |
| Solyc01g080350.2.1 | Tomato | plastid | 73.04 | 74.12 |
| PGSC0003DMT400033238 | Potato | cytosol | 73.04 | 73.47 |
| GSMUA_Achr11P... | Banana | cytosol | 63.19 | 66.26 |
| GSMUA_Achr5P27410_001 | Banana | cytosol | 55.65 | 66.21 |
| TraesCS2B01G163800.1 | Wheat | mitochondrion | 62.9 | 64.58 |
| TraesCS2D01G142500.1 | Wheat | mitochondrion | 62.9 | 64.58 |
| TraesCS2A01G139800.1 | Wheat | mitochondrion | 62.61 | 64.29 |
| HORVU2Hr1G024780.11 | Barley | cytosol | 57.97 | 64.1 |
| Os07t0647100-01 | Rice | mitochondrion | 62.61 | 64.09 |
| EER97658 | Sorghum | mitochondrion | 62.32 | 63.99 |
| EER92235 | Sorghum | mitochondrion | 60.0 | 62.35 |
| Os03t0359700-01 | Rice | plasma membrane | 60.29 | 61.9 |
| TraesCS3B01G378800.1 | Wheat | cytosol | 56.81 | 61.44 |
| TraesCS3A01G347100.1 | Wheat | cytosol | 56.23 | 60.81 |
| TraesCS3D01G340700.1 | Wheat | cytosol | 56.23 | 60.81 |
| Zm00001d007058_P002 | Maize | mitochondrion | 60.29 | 55.03 |
| KRH08140 | Soybean | plastid | 14.2 | 51.04 |
| KRH11335 | Soybean | extracellular | 13.62 | 50.54 |
| HORVU3Hr1G088310.1 | Barley | cytosol | 56.81 | 50.26 |
| Zm00001d029234_P016 | Maize | mitochondrion | 49.57 | 48.03 |
| AT5G47540.1 | Thale cress | cytosol | 42.61 | 42.86 |
| AT4G17270.1 | Thale cress | mitochondrion | 42.03 | 42.27 |
| AT2G03410.1 | Thale cress | cytosol | 39.13 | 38.79 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:35.1 | EntrezGene:832012 | UniProt:A0A178UE06 | ProteinID:AED92631.1 | InterPro:ARM-like |
| InterPro:ARM-type_fold | ArrayExpress:AT5G18940 | EnsemblPlantsGene:AT5G18940 | RefSeq:AT5G18940 | TAIR:AT5G18940 | RefSeq:AT5G18940-TAIR-G |
| EnsemblPlants:AT5G18940.1 | TAIR:AT5G18940.1 | EMBL:AY088359 | EMBL:BT030099 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0008150 | InterPro:IPR011989 | InterPro:Mo25 | RefSeq:NP_568368.1 | ProteinID:OAO91993.1 |
| PFAM:PF08569 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR10182 |
| PANTHER:PTHR10182:SF15 | UniProt:Q8L9L9 | SUPFAM:SSF48371 | UniParc:UPI00000A5B85 | SEG:seg | : |
Description
At5g18940 [Source:UniProtKB/TrEMBL;Acc:Q8L9L9]
Coordinates
chr5:+:6325534..6328354
Molecular Weight (calculated)
39843.2 Da
IEP (calculated)
5.637
GRAVY (calculated)
-0.118
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFSFFKPSR PKTPQEVVKA IRDSLMALDT KTVVEVKALE KALEEVEKNF SSLRGILSGD GETEPNADQA VQLALEFCKE DVVSLVIHKL HILGWETRKD
101: LLHCWSILLK QKVGDTYCCV QYFEEHFELL DSLVVCYDNK EIALHCGSML RECIKFPSLA KYILESACFE LFFKFVELPN FDVASDAFST FKDLLTKHDS
201: VVSEFLTSHY TEFFDVYERL LTSSNYVTRR QSLKLLSDFL LEPPNSHIMK KFILEVRYLK VIMTLLKDSS KNIQISAFHI FKIFVANPNK PQEVKIILAR
301: NHEKLLELLH DLSPGKGSED DQFEEEKELI IEEIQKLSGL KNLER
101: LLHCWSILLK QKVGDTYCCV QYFEEHFELL DSLVVCYDNK EIALHCGSML RECIKFPSLA KYILESACFE LFFKFVELPN FDVASDAFST FKDLLTKHDS
201: VVSEFLTSHY TEFFDVYERL LTSSNYVTRR QSLKLLSDFL LEPPNSHIMK KFILEVRYLK VIMTLLKDSS KNIQISAFHI FKIFVANPNK PQEVKIILAR
301: NHEKLLELLH DLSPGKGSED DQFEEEKELI IEEIQKLSGL KNLER
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.