Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92571 | Canola | cytosol | 98.84 | 98.84 |
| AT5G18940.1 | Thale cress | cytosol | 95.07 | 95.07 |
| KRH20946 | Soybean | cytosol | 77.97 | 79.35 |
| VIT_05s0020g02410.t01 | Wine grape | cytosol | 77.1 | 77.1 |
| Solyc01g080350.2.1 | Tomato | plastid | 73.04 | 74.12 |
| PGSC0003DMT400033238 | Potato | cytosol | 73.04 | 73.47 |
| GSMUA_Achr11P... | Banana | cytosol | 62.9 | 65.96 |
| GSMUA_Achr5P27410_001 | Banana | cytosol | 55.07 | 65.52 |
| TraesCS2B01G163800.1 | Wheat | mitochondrion | 62.9 | 64.58 |
| Os07t0647100-01 | Rice | mitochondrion | 62.9 | 64.39 |
| TraesCS2A01G139800.1 | Wheat | mitochondrion | 62.61 | 64.29 |
| TraesCS2D01G142500.1 | Wheat | mitochondrion | 62.61 | 64.29 |
| EER97658 | Sorghum | mitochondrion | 62.32 | 63.99 |
| HORVU2Hr1G024780.11 | Barley | cytosol | 57.68 | 63.78 |
| Os03t0359700-01 | Rice | plasma membrane | 60.58 | 62.2 |
| TraesCS3B01G378800.1 | Wheat | cytosol | 57.1 | 61.76 |
| EER92235 | Sorghum | mitochondrion | 59.42 | 61.75 |
| TraesCS3D01G340700.1 | Wheat | cytosol | 56.52 | 61.13 |
| TraesCS3A01G347100.1 | Wheat | cytosol | 55.36 | 59.87 |
| Zm00001d007058_P002 | Maize | mitochondrion | 60.29 | 55.03 |
| KRH08140 | Soybean | plastid | 14.2 | 51.04 |
| HORVU3Hr1G088310.1 | Barley | cytosol | 56.81 | 50.26 |
| KRH11335 | Soybean | extracellular | 13.33 | 49.46 |
| Zm00001d029234_P016 | Maize | mitochondrion | 48.99 | 47.47 |
| CDY37193 | Canola | cytosol | 6.67 | 46.94 |
| CDY42976 | Canola | cytosol | 21.16 | 42.69 |
| CDY17728 | Canola | cytosol, mitochondrion | 40.87 | 42.22 |
| CDX90480 | Canola | cytosol | 41.16 | 41.89 |
| CDX77775 | Canola | cytosol, mitochondrion | 41.16 | 41.76 |
| CDY09635 | Canola | cytosol, mitochondrion | 40.87 | 41.59 |
| CDY40559 | Canola | cytosol | 41.16 | 41.4 |
| CDY28923 | Canola | cytosol, mitochondrion | 40.87 | 41.11 |
| CDY25960 | Canola | cytosol | 42.03 | 38.98 |
| CDY04151 | Canola | cytosol | 37.97 | 38.08 |
| CDY41055 | Canola | mitochondrion | 41.45 | 36.95 |
| CDY42975 | Canola | mitochondrion | 16.52 | 32.02 |
| CDY45561 | Canola | cytosol | 37.68 | 27.43 |
Protein Annotations
| EnsemblPlants:CDY13930 | EnsemblPlantsGene:GSBRNA2T00078413001 | Gene3D:1.25.10.10 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-like |
| InterPro:ARM-type_fold | InterPro:IPR011989 | InterPro:Mo25 | ncoils:Coil | PANTHER:PTHR10182 | PANTHER:PTHR10182:SF15 |
| PFAM:PF08569 | ProteinID:CDY13930 | ProteinID:CDY13930.1 | SEG:seg | SUPFAM:SSF48371 | UniParc:UPI0004EDC4B5 |
| UniProt:A0A078FHL4 | MapMan:35.1 | : | : | : | : |
Description
BnaC09g38960DBnaC09g38960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FHL4]
Coordinates
chrLK032039:+:275099..277576
Molecular Weight (calculated)
39975.6 Da
IEP (calculated)
5.813
GRAVY (calculated)
-0.077
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFSFFKPSR PKTPQEVVKA IRDSLLALDT KTVVEVKALE KALEEVEKNF SFLRGMLSGD GEAEPNADQA VQLALEFCKE DVISLVIHKL HILGWETRKD
101: LLHCWSILLK QKVGEAYCCV QYFEEHFELL DCLVVCYDNK EIALHCGSML RECIKFPSLA KYILESACFE LFFKFVELPN FDVASDAFST FKDLLTKHDT
201: VVSEFLTSHY PEFFDIYERL LTSSNYVTRR QSLKLLSDFL LEPPNSHIMK KFILEVRYMK VIMTLLKDSS KNIQISAFHI FKIFVANPSK PQEVKIILAR
301: NHEKLLELLH NLSPGKGSED DQFEEEKELI IEEIQKMSRL KNLEL
101: LLHCWSILLK QKVGEAYCCV QYFEEHFELL DCLVVCYDNK EIALHCGSML RECIKFPSLA KYILESACFE LFFKFVELPN FDVASDAFST FKDLLTKHDT
201: VVSEFLTSHY PEFFDIYERL LTSSNYVTRR QSLKLLSDFL LEPPNSHIMK KFILEVRYMK VIMTLLKDSS KNIQISAFHI FKIFVANPSK PQEVKIILAR
301: NHEKLLELLH NLSPGKGSED DQFEEEKELI IEEIQKMSRL KNLEL
001: MSFSFFKPSR PKTPQEVVKA IRDSLMALDT KTVVEVKALE KALEEVEKNF SSLRGILSGD GETEPNADQA VQLALEFCKE DVVSLVIHKL HILGWETRKD
101: LLHCWSILLK QKVGDTYCCV QYFEEHFELL DSLVVCYDNK EIALHCGSML RECIKFPSLA KYILESACFE LFFKFVELPN FDVASDAFST FKDLLTKHDS
201: VVSEFLTSHY TEFFDVYERL LTSSNYVTRR QSLKLLSDFL LEPPNSHIMK KFILEVRYLK VIMTLLKDSS KNIQISAFHI FKIFVANPNK PQEVKIILAR
301: NHEKLLELLH DLSPGKGSED DQFEEEKELI IEEIQKLSGL KNLER
101: LLHCWSILLK QKVGDTYCCV QYFEEHFELL DSLVVCYDNK EIALHCGSML RECIKFPSLA KYILESACFE LFFKFVELPN FDVASDAFST FKDLLTKHDS
201: VVSEFLTSHY TEFFDVYERL LTSSNYVTRR QSLKLLSDFL LEPPNSHIMK KFILEVRYLK VIMTLLKDSS KNIQISAFHI FKIFVANPNK PQEVKIILAR
301: NHEKLLELLH DLSPGKGSED DQFEEEKELI IEEIQKLSGL KNLER
Arabidopsis Description
At5g18940 [Source:UniProtKB/TrEMBL;Acc:Q8L9L9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.