Factsheet for VIT_05s0020g02410.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033238	Potato	cytosol	80.0	80.47
KRH20946	Soybean	cytosol	78.84	80.24
Solyc01g080350.2.1	Tomato	plastid	77.97	79.12
AT5G18940.1	Thale cress	cytosol	77.68	77.68
Bra002195.1-P	Field mustard	cytosol	77.1	77.1
CDX92571	Canola	cytosol	77.1	77.1
CDY13930	Canola	cytosol	77.1	77.1
GSMUA_Achr5P27410_001	Banana	cytosol	60.58	72.07
GSMUA_Achr11P...	Banana	cytosol	64.93	68.09
EER97658	Sorghum	mitochondrion	64.93	66.67
Os07t0647100-01	Rice	mitochondrion	64.35	65.88
TraesCS2B01G163800.1	Wheat	mitochondrion	63.77	65.48
TraesCS2A01G139800.1	Wheat	mitochondrion	63.48	65.18
TraesCS2D01G142500.1	Wheat	mitochondrion	63.48	65.18
HORVU2Hr1G024780.11	Barley	cytosol	58.55	64.74
Os03t0359700-01	Rice	plasma membrane	62.61	64.29
EER92235	Sorghum	mitochondrion	60.58	62.95
TraesCS3B01G378800.1	Wheat	cytosol	56.52	61.13
TraesCS3D01G340700.1	Wheat	cytosol	55.65	60.19
TraesCS3A01G347100.1	Wheat	cytosol	55.07	59.56
Zm00001d007058_P002	Maize	mitochondrion	62.9	57.41
HORVU3Hr1G088310.1	Barley	cytosol	56.52	50.0
Zm00001d029234_P016	Maize	mitochondrion	50.14	48.6
KRH08140	Soybean	plastid	12.75	45.83
KRH11335	Soybean	extracellular	12.17	45.16
VIT_10s0405g00020.t01	Wine grape	cytosol	43.19	43.82
VIT_19s0090g01550.t01	Wine grape	mitochondrion	40.58	41.67
VIT_12s0057g00410.t01	Wine grape	cytosol	39.42	38.64

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100249442	wikigene:100249442	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
ProteinID:CBI26159	ProteinID:CBI26159.3	ncoils:Coil	UniProt:D7T6N8	EMBL:FN595749	GO:GO:0003674
GO:GO:0005488	InterPro:IPR011989	EntrezGene:LOC100249442	wikigene:LOC100249442	InterPro:Mo25	PFAM:PF08569
PANTHER:PTHR10182	PANTHER:PTHR10182:SF15	SUPFAM:SSF48371	TIGR:TC69454	UniParc:UPI00015C7FA5	ArrayExpress:VIT_05s0020g02410
EnsemblPlantsGene:VIT_05s0020g02410	EnsemblPlants:VIT_05s0020g02410.t01	unigene:Vvi.850	RefSeq:XP_002279174	RefSeq:XP_002279174.2	RefSeq:XP_002279212
RefSeq:XP_002279212.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:+:4097309..4111985

Molecular Weight (calculated)

39995.9 Da

IEP (calculated)

6.429

GRAVY (calculated)

-0.062

Length

345 amino acids

Sequence
(BLAST)

001: MSFSFFKASR PKTPQELVKA IKDSLMALDS KTVAEVKALE KALEEVEKNF VTMKFMLSGD GETEPNMEQV SQLTLEICKE DVLALLIHKL SILGWEARKD
101: LVHCWSILLR QMVDSRYCCV EYIENHFELL DFLVVCYDNK EIAVNCGNML RECIRFQTLA KYILESTSFE LFFKFVELPN FDVASDAFLT FKDLLTKHGN
201: AVAVFLTAHY DEFFDQYEKL LTSPNYVTRR QSLKLLSEFL LEPPNSHIMK RYILEVRYLK VMMTLLKDSS KNIQISAFHI FKIFVANPNK PREIKVILAK
301: NHERLLALLQ SLSGGKGADD DQFEEEKELI IKEIQRVSRL PNLVH

Best Arabidopsis Sequence Match ( AT5G18940.1 )
(BLAST)

001: MSFSFFKPSR PKTPQEVVKA IRDSLMALDT KTVVEVKALE KALEEVEKNF SSLRGILSGD GETEPNADQA VQLALEFCKE DVVSLVIHKL HILGWETRKD
101: LLHCWSILLK QKVGDTYCCV QYFEEHFELL DSLVVCYDNK EIALHCGSML RECIKFPSLA KYILESACFE LFFKFVELPN FDVASDAFST FKDLLTKHDS
201: VVSEFLTSHY TEFFDVYERL LTSSNYVTRR QSLKLLSDFL LEPPNSHIMK KFILEVRYLK VIMTLLKDSS KNIQISAFHI FKIFVANPNK PQEVKIILAR
301: NHEKLLELLH DLSPGKGSED DQFEEEKELI IEEIQKLSGL KNLER

Arabidopsis Description

At5g18940 [Source:UniProtKB/TrEMBL;Acc:Q8L9L9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.