Factsheet for VIT_19s0090g01550.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	36.01	74.69
VIT_10s0405g00020.t01	Wine grape	cytosol	74.4	73.53
Os07t0585100-01	Rice	plasma membrane	71.73	71.73
GSMUA_Achr1P22810_001	Banana	cytosol	70.83	70.83
TraesCS2B01G216100.1	Wheat	cytosol	70.54	70.33
TraesCS2D01G197000.1	Wheat	golgi	70.54	70.33
TraesCS2A01G191000.1	Wheat	cytosol	70.54	70.33
HORVU2Hr1G036030.1	Barley	cytosol	70.54	70.33
Zm00001d006710_P004	Maize	mitochondrion	70.24	70.24
GSMUA_AchrUn_...	Banana	cytosol	36.31	70.11
Zm00001d021954_P003	Maize	plasma membrane	69.94	69.94
VIT_12s0057g00410.t01	Wine grape	cytosol	62.2	59.38
PGSC0003DMT400057131	Potato	plastid	67.86	55.47
Solyc07g065130.2.1	Tomato	plastid	67.86	55.47
Os03t0172200-01	Rice	plasma membrane	57.14	53.63
Zm00001d027862_P002	Maize	plastid	57.14	52.03
TraesCS4A01G015400.2	Wheat	plastid	55.06	50.27
TraesCS4D01G287400.4	Wheat	plastid	54.17	49.46
TraesCS4B01G288500.2	Wheat	plastid	53.57	48.91
VIT_05s0020g02410.t01	Wine grape	cytosol	41.67	40.58
OQU85418	Sorghum	cytosol	20.24	31.05

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100252050	wikigene:100252050	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
ProteinID:CBI26723	ProteinID:CBI26723.3	UniProt:D7T864	EMBL:FN595751	GO:GO:0003674	GO:GO:0005488
InterPro:IPR011989	EntrezGene:LOC100252050	wikigene:LOC100252050	InterPro:Mo25	PFAM:PF08569	PANTHER:PTHR10182
PANTHER:PTHR10182:SF12	SUPFAM:SSF48371	UniParc:UPI00015C755D	ArrayExpress:VIT_19s0090g01550	EnsemblPlantsGene:VIT_19s0090g01550	EnsemblPlants:VIT_19s0090g01550.t01
unigene:Vvi.6002	RefSeq:XP_002275237	RefSeq:XP_002275237.1	:	:	:

Description

No Description!

Coordinates

chr19:+:7643693..7650080

Molecular Weight (calculated)

39222.7 Da

IEP (calculated)

8.288

GRAVY (calculated)

-0.248

Length

336 amino acids

Sequence
(BLAST)

001: MKALFKTKPR TPAYLVRQTR DLLIYLSGCS DRDTKRELKM AELSKLIWEL KLILYGSGEN EPVAEACAEL TQEFFKENTL RLLIIFLRKM NLEARRDATQ
101: VVANLQRQQV KSRLIASDYL EANLDLMELL ISGYEDLDIA LHYGGMLKEC IRHQSIARHV LESQQMRKFF DYIQIPNFDV AADATATFKE LLTRHKSTVA
201: EFLKWNYDWF FAEYNTKLLE SENYVTRRQG VKLLAEILLD RSNCAVMVRY VSSKDNMRIL MNLLREPSKT IQIEAFHVFK LFVANKNKPD DIINILVANR
301: TKLLFFFSNF KIDGENEGFE EDKAHVVKEI AELQPK

Best Arabidopsis Sequence Match ( AT5G47540.1 )
(BLAST)

001: MKGLFKSKPR TPADLVRQTR DLLLFSDRST SLPDLRDSKR DEKMAELSRN IRDMKSILYG NSEAEPVAEA CAQLTQEFFK EDTLRLLITC LPKLNLETRK
101: DATQVVANLQ RQQVNSRLIA SDYLEANIDL MDVLIEGFEN TDMALHYGAM FRECIRHQIV AKYVLESDHV KKFFDYIQLP NFDIAADAAA TFKELLTRHK
201: STVAEFLTKN EDWFFADYNS KLLESSNYIT RRQAIKLLGD ILLDRSNSAV MTKYVSSRDN LRILMNLLRE SSKSIQIEAF HVFKLFAANQ NKPADIVNIL
301: VANRSKLLRL LADLKPDKED ERFEADKSQV LREIAALEPR DLA

Arabidopsis Description

At5g47540 [Source:UniProtKB/TrEMBL;Acc:B3LFB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.