Factsheet for VIT_12s0057g00410.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	38.07	77.01
VIT_10s0405g00020.t01	Wine grape	cytosol	67.33	69.71
HORVU2Hr1G036030.1	Barley	cytosol	64.77	67.66
TraesCS2B01G216100.1	Wheat	cytosol	64.77	67.66
TraesCS2D01G197000.1	Wheat	golgi	64.77	67.66
TraesCS2A01G191000.1	Wheat	cytosol	64.49	67.36
GSMUA_Achr1P22810_001	Banana	cytosol	64.2	67.26
Os07t0585100-01	Rice	plasma membrane	63.64	66.67
Zm00001d021954_P003	Maize	plasma membrane	63.07	66.07
KRH74028	Soybean	cytosol	66.19	66.01
KRH14096	Soybean	cytosol	65.91	65.72
Zm00001d006710_P004	Maize	mitochondrion	62.22	65.18
VIT_19s0090g01550.t01	Wine grape	mitochondrion	59.38	62.2
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	27.84	60.49
Os03t0172200-01	Rice	plasma membrane	55.68	54.75
Zm00001d027862_P002	Maize	plastid	52.56	50.14
TraesCS4A01G015400.2	Wheat	plastid	49.72	47.55
TraesCS4B01G288500.2	Wheat	plastid	49.15	47.01
TraesCS4D01G287400.4	Wheat	plastid	48.58	46.47
VIT_05s0020g02410.t01	Wine grape	cytosol	38.64	39.42
OQU85418	Sorghum	cytosol	16.19	26.03

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100261371	wikigene:100261371	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
ProteinID:CCB51702	ProteinID:CCB51702.1	UniProt:F6HHK6	EMBL:FN595759	GO:GO:0003674	GO:GO:0005488
InterPro:IPR011989	EntrezGene:LOC100261371	wikigene:LOC100261371	InterPro:Mo25	PFAM:PF08569	PANTHER:PTHR10182
PANTHER:PTHR10182:SF17	SUPFAM:SSF48371	UniParc:UPI0002108A9A	ArrayExpress:VIT_12s0057g00410	EnsemblPlantsGene:VIT_12s0057g00410	EnsemblPlants:VIT_12s0057g00410.t01
RefSeq:XP_002270949	RefSeq:XP_002270949.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:+:9017188..9022269

Molecular Weight (calculated)

40839.3 Da

IEP (calculated)

7.921

GRAVY (calculated)

-0.288

Length

352 amino acids

Sequence
(BLAST)

001: MKGLFKSKPR TPAELVRYMR ELLIFIDRGA QTREQKREKQ REEKVESCDV SELNKCILEI RTILYGIDGA EPVLEACTQL TLEFLKEDTI RLLIVCLPKL
101: DLGARQNATR VITNLSRQRV NSRLIAAEYL ENNIDVINIL IPGYEDSEIA LSYGAILREY IRYQSVARYV LESAQMKKFF DYVQNPTFEI ASDAAATFKE
201: LLTRHKSTVA EFLSKNFDWF FREYNSQLLQ SPNYITRRHA VKLLGDMLLD RSNSAVMIRY VSSLDNMRIL MNLLRESNKA IQLESFHVFK LFVANQNKPP
301: EIVSILVTNR SKLLRFFGDF NIDKEDDQFE ADKAQVIREI TNLNPRADDG VQ

Best Arabidopsis Sequence Match ( AT5G47540.1 )
(BLAST)

001: MKGLFKSKPR TPADLVRQTR DLLLFSDRST SLPDLRDSKR DEKMAELSRN IRDMKSILYG NSEAEPVAEA CAQLTQEFFK EDTLRLLITC LPKLNLETRK
101: DATQVVANLQ RQQVNSRLIA SDYLEANIDL MDVLIEGFEN TDMALHYGAM FRECIRHQIV AKYVLESDHV KKFFDYIQLP NFDIAADAAA TFKELLTRHK
201: STVAEFLTKN EDWFFADYNS KLLESSNYIT RRQAIKLLGD ILLDRSNSAV MTKYVSSRDN LRILMNLLRE SSKSIQIEAF HVFKLFAANQ NKPADIVNIL
301: VANRSKLLRL LADLKPDKED ERFEADKSQV LREIAALEPR DLA

Arabidopsis Description

At5g47540 [Source:UniProtKB/TrEMBL;Acc:B3LFB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.