Factsheet for PGSC0003DMT400057131

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g065130.2.1	Tomato	plastid	95.38	95.38
GSMUA_AchrUn_...	Banana	cytosol	31.87	75.29
PGSC0003DMT400034558	Potato	cytosol	58.88	71.18
PGSC0003DMT400021798	Potato	cytosol	58.39	70.38
TraesCS2A01G191000.1	Wheat	cytosol	56.2	68.55
Os07t0585100-01	Rice	plasma membrane	55.96	68.45
HORVU2Hr1G036030.1	Barley	cytosol	55.96	68.25
TraesCS2B01G216100.1	Wheat	cytosol	55.96	68.25
TraesCS2D01G197000.1	Wheat	golgi	55.96	68.25
VIT_19s0090g01550.t01	Wine grape	mitochondrion	55.47	67.86
GSMUA_Achr1P22810_001	Banana	cytosol	55.23	67.56
Zm00001d021954_P003	Maize	plasma membrane	55.23	67.56
Zm00001d006710_P004	Maize	mitochondrion	54.26	66.37
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	24.82	62.96
Os03t0172200-01	Rice	plasma membrane	47.45	54.47
Zm00001d027862_P002	Maize	plastid	45.5	50.68
TraesCS4A01G015400.2	Wheat	plastid	43.8	48.91
TraesCS4B01G288500.2	Wheat	plastid	43.07	48.1
TraesCS4D01G287400.4	Wheat	plastid	43.07	48.1
PGSC0003DMT400033238	Potato	cytosol	32.85	39.36
OQU85418	Sorghum	cytosol	14.36	26.94

Protein Annotations

EnsemblPlants:PGSC0003DMT400057131	EnsemblPlantsGene:PGSC0003DMG401022195	EntrezGene:102594979	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:IPR011989	InterPro:Mo25	ncoils:Coil	PANTHER:PTHR10182
PANTHER:PTHR10182:SF12	PFAM:PF08569	PGSC:PGSC0003DMG401022195	RefSeq:XP_006346171.1	SUPFAM:SSF48371	UniParc:UPI0002956C4B
UniProt:M1C0H0	MapMan:35.1	:	:	:	:

Description

Calcium-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG401022195]

Coordinates

chr7:-:55263577..55267127

Molecular Weight (calculated)

46873.7 Da

IEP (calculated)

9.053

GRAVY (calculated)

-0.246

Length

411 amino acids

Sequence
(BLAST)

001: MPIPATQIAG LTNGINGSRK VKPNNLKKLF TKAFRSTAVK SIFKSKAKRK PPAEIVRRVR FLLEAVDSLD DNVDPSHFDK MEELDSLLHE LKAMLYGSNE
101: CEPAVDACAQ LTQEFFRENT FRLIIICLPK LNLEARKDVT RIVANLQRQP VNSRLIASDY LEANSALMDH LVCGYDDPGL ALHYGTMLRE CIRHQVVARY
201: VLNSEHMKKF FDYMQIPEFD VAADATATFK ELMTRHKSTV AEFLSENYDW FFVEFNAKLL ESANYITRRQ AIKLLGDILL DRSNSAVMTR YVSSKDNLRI
301: LMNLLREASK NIQLDAFHVF KLFVANRNKP TDIVNIIVAN RSKLLRFFAS FRIDKEDEQF EADKAQVVKE IAELEAKGPL FSGELHKFPG TPTASGELYK
401: LPTTPLSRQL T

Best Arabidopsis Sequence Match ( AT5G47540.1 )
(BLAST)

001: MKGLFKSKPR TPADLVRQTR DLLLFSDRST SLPDLRDSKR DEKMAELSRN IRDMKSILYG NSEAEPVAEA CAQLTQEFFK EDTLRLLITC LPKLNLETRK
101: DATQVVANLQ RQQVNSRLIA SDYLEANIDL MDVLIEGFEN TDMALHYGAM FRECIRHQIV AKYVLESDHV KKFFDYIQLP NFDIAADAAA TFKELLTRHK
201: STVAEFLTKN EDWFFADYNS KLLESSNYIT RRQAIKLLGD ILLDRSNSAV MTKYVSSRDN LRILMNLLRE SSKSIQIEAF HVFKLFAANQ NKPADIVNIL
301: VANRSKLLRL LADLKPDKED ERFEADKSQV LREIAALEPR DLA

Arabidopsis Description

At5g47540 [Source:UniProtKB/TrEMBL;Acc:B3LFB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.