CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0359700-01	Rice	plasma membrane	82.83	81.85
TraesCS3D01G340700.1	Wheat	cytosol	75.6	78.68
TraesCS3B01G378800.1	Wheat	cytosol	75.3	78.37
TraesCS3A01G347100.1	Wheat	cytosol	74.7	77.74
EER97658	Sorghum	mitochondrion	76.81	75.89
Zm00001d029234_P016	Maize	mitochondrion	73.49	68.54
GSMUA_Achr5P27410_001	Banana	cytosol	57.83	66.21
GSMUA_Achr11P...	Banana	cytosol	65.06	65.65
HORVU3Hr1G088310.1	Barley	cytosol	77.11	65.64
VIT_05s0020g02410.t01	Wine grape	cytosol	62.95	60.58
AT5G18940.1	Thale cress	cytosol	62.35	60.0
Solyc01g080350.2.1	Tomato	plastid	61.45	60.0
KRH20946	Soybean	cytosol	60.84	59.59
Bra002195.1-P	Field mustard	cytosol	61.75	59.42
CDY13930	Canola	cytosol	61.75	59.42
CDX92571	Canola	cytosol	61.75	59.42
PGSC0003DMT400033238	Potato	cytosol	60.84	58.89
OQU90170	Sorghum	cytosol	42.77	42.26
KRH08140	Soybean	plastid	9.64	33.33
OQU85419	Sorghum	cytosol	36.45	32.97
KRH11335	Soybean	extracellular	8.43	30.11
KXG40077	Sorghum	plastid	35.84	27.23
OQU85418	Sorghum	cytosol	9.34	14.16

Protein Annotations

EnsemblPlants:EER92235	EnsemblPlantsGene:SORBI_3001G364800	EntrezGene:8082616	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:IPR011989	InterPro:Mo25	PANTHER:PTHR10182	PANTHER:PTHR10182:SF15
PFAM:PF08569	ProteinID:EER92235	ProteinID:EER92235.1	RefSeq:XP_002465237.1	SEG:seg	SUPFAM:SSF48371
UniParc:UPI0001A820D6	UniProt:C5WZL4	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:65358659..65362943

Molecular Weight (calculated)

38523.9 Da

IEP (calculated)

5.478

GRAVY (calculated)

0.013

Length

332 amino acids

Sequence
(BLAST)

001: MSFFFRMASR LRPSTPEEVV RSIKDSFLAL HTRTHAKALE EVEKNISSLR LLIYGDGEVE PNQEQVLQIT LEICKEDVIS LIIQNLPSLG WGVRKDLVLC
101: WCIFLRQKVD ETYCCVQYIE NHLELLDFLV GCYKNLDIAL NCGNMLRECI KYPTLAKYIL ESGSFELFFE YVELPNFDIA SDALNTFKDL LTKHEDVVAG
201: FLSSHYEQFF ELYSRLLSST NYVTRRQAIK FLSEFLLEAP NSQIMKRYIV EVRFLNIMIN LLKDSSKNIR ICAFHVFKVF VANPNKPQCI IVALLDNRRE
301: VLKLLHSLPT SKGDDELDEE KDLIIQEIQK LA

Best Arabidopsis Sequence Match ( AT5G18940.1 )
(BLAST)

001: MSFSFFKPSR PKTPQEVVKA IRDSLMALDT KTVVEVKALE KALEEVEKNF SSLRGILSGD GETEPNADQA VQLALEFCKE DVVSLVIHKL HILGWETRKD
101: LLHCWSILLK QKVGDTYCCV QYFEEHFELL DSLVVCYDNK EIALHCGSML RECIKFPSLA KYILESACFE LFFKFVELPN FDVASDAFST FKDLLTKHDS
201: VVSEFLTSHY TEFFDVYERL LTSSNYVTRR QSLKLLSDFL LEPPNSHIMK KFILEVRYLK VIMTLLKDSS KNIQISAFHI FKIFVANPNK PQEVKIILAR
301: NHEKLLELLH DLSPGKGSED DQFEEEKELI IEEIQKLSGL KNLER

Arabidopsis Description

At5g18940 [Source:UniProtKB/TrEMBL;Acc:Q8L9L9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.