CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027862_P002	Maize	plastid	89.65	89.16
KXG40077	Sorghum	plastid	97.55	81.92
Os03t0172200-01	Rice	plasma membrane	66.21	67.88
GSMUA_AchrUn_...	Banana	cytosol	32.15	67.82
GSMUA_Achr1P22810_001	Banana	cytosol	57.49	62.8
OQU90170	Sorghum	cytosol	57.22	62.5
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	26.16	59.26
TraesCS4A01G015400.2	Wheat	plastid	58.58	58.42
TraesCS4B01G288500.2	Wheat	plastid	58.31	58.15
TraesCS4D01G287400.4	Wheat	plastid	58.04	57.88
OQU85418	Sorghum	cytosol	31.34	52.51
EER92235	Sorghum	mitochondrion	32.97	36.45
EER97658	Sorghum	mitochondrion	30.52	33.33

Protein Annotations

EnsemblPlants:OQU85419	EnsemblPlantsGene:SORBI_3004G235801	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:IPR011989	InterPro:Mo25	PANTHER:PTHR10182	PANTHER:PTHR10182:SF16	PFAM:PF08569
ProteinID:KXG18702.1	ProteinID:OQU85419	ProteinID:OQU85419.1	SEG:seg	SUPFAM:SSF48371	UniParc:UPI00076BBFD0
UniProt:A0A109NDT0	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:58354326..58365595

Molecular Weight (calculated)

42244.9 Da

IEP (calculated)

7.296

GRAVY (calculated)

-0.242

Length

367 amino acids

Sequence
(BLAST)

001: MTGCLWPCVG AAVAGDGADH RGLFRSKPRT PVEVVQHVRD LVTYVLNNKD GCAGGRRDAK LEHRMLELSK GIKEMKGILY GNGEDDPCEE ACKQLTKEFF
101: KKNTDTFRQF IVCLQYVNLD TQKDVTQVIA NLQRQKVDSR LVASDYLEAN LDLLEILMSG YENLDIAIHY STLLRDCIRH QVAARYVLES PHFRTFFDHI
201: QFPDFNIQSD VFKTFKELMT RHKSTVAEFF SKNYDWFFAE FNSKLILSAS NYFIRRQAVQ LLRDILLERS NSAVMMCYVS SKEHLMIHMN LLRDDSIAIQ
301: VEAFHVFKLF VANKEQPPEI TSILRTNRSK LLRFLKDFTA VEKDDKKFEA DKATVISEIL ALAGAEN

Best Arabidopsis Sequence Match ( AT5G47540.1 )
(BLAST)

001: MKGLFKSKPR TPADLVRQTR DLLLFSDRST SLPDLRDSKR DEKMAELSRN IRDMKSILYG NSEAEPVAEA CAQLTQEFFK EDTLRLLITC LPKLNLETRK
101: DATQVVANLQ RQQVNSRLIA SDYLEANIDL MDVLIEGFEN TDMALHYGAM FRECIRHQIV AKYVLESDHV KKFFDYIQLP NFDIAADAAA TFKELLTRHK
201: STVAEFLTKN EDWFFADYNS KLLESSNYIT RRQAIKLLGD ILLDRSNSAV MTKYVSSRDN LRILMNLLRE SSKSIQIEAF HVFKLFAANQ NKPADIVNIL
301: VANRSKLLRL LADLKPDKED ERFEADKSQV LREIAALEPR DLA

Arabidopsis Description

At5g47540 [Source:UniProtKB/TrEMBL;Acc:B3LFB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.