CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
vacuole 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G142500.1	Wheat	mitochondrion	89.29	89.29
TraesCS2B01G163800.1	Wheat	mitochondrion	89.29	89.29
TraesCS2A01G139800.1	Wheat	mitochondrion	89.29	89.29
HORVU2Hr1G024780.11	Barley	cytosol	81.55	87.82
Os07t0647100-01	Rice	mitochondrion	87.8	87.54
Zm00001d007058_P002	Maize	mitochondrion	94.05	83.6
EER92235	Sorghum	mitochondrion	75.89	76.81
GSMUA_Achr5P27410_001	Banana	cytosol	62.2	72.07
GSMUA_Achr11P...	Banana	cytosol	68.75	70.21
KRH20946	Soybean	cytosol	66.07	65.49
VIT_05s0020g02410.t01	Wine grape	cytosol	66.67	64.93
Solyc01g080350.2.1	Tomato	plastid	64.29	63.53
PGSC0003DMT400033238	Potato	cytosol	63.69	62.39
AT5G18940.1	Thale cress	cytosol	63.99	62.32
CDY13930	Canola	cytosol	63.99	62.32
Bra002195.1-P	Field mustard	cytosol	63.69	62.03
CDX92571	Canola	cytosol	63.69	62.03
OQU90170	Sorghum	cytosol	42.86	42.86
KRH08140	Soybean	plastid	11.31	39.58
KRH11335	Soybean	extracellular	10.71	38.71
OQU85419	Sorghum	cytosol	33.33	30.52
KXG40077	Sorghum	plastid	32.74	25.17
OQU85418	Sorghum	cytosol	9.23	14.16

Protein Annotations

EnsemblPlants:EER97658	EnsemblPlantsGene:SORBI_3002G398500	EntrezGene:8073120	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:IPR011989	InterPro:Mo25	PANTHER:PTHR10182	PANTHER:PTHR10182:SF15
PFAM:PF08569	ProteinID:EER97658	ProteinID:EER97658.1	RefSeq:XP_002461137.1	SUPFAM:SSF48371	UniParc:UPI0001A8348C
UniProt:C5X425	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:74976775..74984644

Molecular Weight (calculated)

38927.2 Da

IEP (calculated)

5.902

GRAVY (calculated)

-0.124

Length

336 amino acids

Sequence
(BLAST)

001: MSFFFRAATR QRPSPQEIAR SIKDSLVALD TKTGAKALED AEKNILTLRH TLAGDGEVEP NQEQVLQVAL EICKEGVLSL FVQNLPSLGW EARKDLVHCW
101: CILLRQKVDE GYCCVQYIEN HFDLLDFLVV CYKNLEVALN CGNMLRECIK YPTLAKYILE SSSFELFFQY VELPNFDIAS DALNTFKDLL TKHEDQVSEF
201: LSSHYEQFFG LYTKLLSSTN YVTRRQSVKF LSEFLLEAPN AQIMKRYILE VRYLNIMMGL LKDSSKNIRI CSFHIFKVFV ANPNKPREII QVLVDNHREL
301: LKLLHNLPTS KGEDEQLDEE RDLIIKEIEK LVRLSV

Best Arabidopsis Sequence Match ( AT5G18940.1 )
(BLAST)

001: MSFSFFKPSR PKTPQEVVKA IRDSLMALDT KTVVEVKALE KALEEVEKNF SSLRGILSGD GETEPNADQA VQLALEFCKE DVVSLVIHKL HILGWETRKD
101: LLHCWSILLK QKVGDTYCCV QYFEEHFELL DSLVVCYDNK EIALHCGSML RECIKFPSLA KYILESACFE LFFKFVELPN FDVASDAFST FKDLLTKHDS
201: VVSEFLTSHY TEFFDVYERL LTSSNYVTRR QSLKLLSDFL LEPPNSHIMK KFILEVRYLK VIMTLLKDSS KNIQISAFHI FKIFVANPNK PQEVKIILAR
301: NHEKLLELLH DLSPGKGSED DQFEEEKELI IEEIQKLSGL KNLER

Arabidopsis Description

At5g18940 [Source:UniProtKB/TrEMBL;Acc:Q8L9L9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.