Factsheet for Solyc01g080350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033238	Potato	cytosol	97.35	96.5
VIT_05s0020g02410.t01	Wine grape	cytosol	79.12	77.97
KRH20946	Soybean	cytosol	74.71	74.93
Bra002195.1-P	Field mustard	cytosol	74.12	73.04
CDX92571	Canola	cytosol	74.12	73.04
CDY13930	Canola	cytosol	74.12	73.04
AT5G18940.1	Thale cress	cytosol	74.12	73.04
GSMUA_Achr5P27410_001	Banana	cytosol	58.53	68.62
GSMUA_Achr11P...	Banana	cytosol	63.82	65.96
EER97658	Sorghum	mitochondrion	63.53	64.29
TraesCS2B01G163800.1	Wheat	mitochondrion	62.65	63.39
TraesCS2A01G139800.1	Wheat	mitochondrion	62.65	63.39
HORVU2Hr1G024780.11	Barley	cytosol	57.94	63.14
TraesCS2D01G142500.1	Wheat	mitochondrion	62.35	63.1
Os07t0647100-01	Rice	mitochondrion	62.06	62.61
EER92235	Sorghum	mitochondrion	60.0	61.45
Os03t0359700-01	Rice	plasma membrane	60.0	60.71
TraesCS3B01G378800.1	Wheat	cytosol	56.18	59.87
TraesCS3D01G340700.1	Wheat	cytosol	55.29	58.93
TraesCS3A01G347100.1	Wheat	cytosol	54.71	58.31
Zm00001d007058_P002	Maize	mitochondrion	61.76	55.56
HORVU3Hr1G088310.1	Barley	cytosol	55.59	48.46
Zm00001d029234_P016	Maize	mitochondrion	50.29	48.03
KRH08140	Soybean	plastid	13.24	46.88
KRH11335	Soybean	extracellular	12.06	44.09
Solyc11g012400.1.1	Tomato	cytosol	42.65	42.65
Solyc05g054130.2.1	Tomato	cytosol	42.65	42.52
Solyc07g065130.2.1	Tomato	plastid	39.71	32.85

Protein Annotations

EnsemblPlants:Solyc01g080350.2.1	EnsemblPlantsGene:Solyc01g080350.2	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:IPR011989	InterPro:Mo25	ncoils:Coil	PANTHER:PTHR10182	PANTHER:PTHR10182:SF15
PFAM:PF08569	SEG:seg	SUPFAM:SSF48371	UniParc:UPI0002762340	UniProt:K4AXS9	MapMan:35.1

Description

No Description!

Coordinates

chr1:-:79564340..79571926

Molecular Weight (calculated)

38881.4 Da

IEP (calculated)

5.690

GRAVY (calculated)

-0.089

Length

340 amino acids

Sequence
(BLAST)

001: MSFSFFKASR PKTPSELART VKDSFNALDS ITVAEVKALE KAMEEVEKNI VAMKVMLAGD GEVEPNPDQV AQLTLEVCNE DVIALFIHKL LILGWEARKN
101: LVHCWSIMLK QKVDSTYCCV QYMENHLELL DFLVVCYDNK EIAMHCGGML RECIKLPSLA KYILESPSFG LFFKFVELPN FDVASDAFST FKDLLTKHES
201: AVSQYLTNNY SEFFEQYEKL LTSPNYVTRR QSLKLLSEFL LEPPNSLIMK RYIAEVGHLK VMMNLLKDSS KNIQISAFHI FKVFVANPNK PREIKLILAK
301: NHEGLLALLN NLGKGGEDDQ FEEEKELIMK EIEKVSRLES

Best Arabidopsis Sequence Match ( AT5G18940.2 )
(BLAST)

001: MSFSFFKPSR PKTPQEVVKA IRDSLMALDT KTVVEVKALE KALEEVEKNF SSLRGILSGD GETEPNADQA VQLALEFCKE DVVSLVIHKL HILGWETRKD
101: LLHCWSILLK QKVGDTYCCV QYFEEHFELL DSLVVCYDNK EIALHCGSML RECIKFPSLA KYILESACFE LFFKFVELPN FDVASDAFST FKDLLTKHDS
201: VVSEFLTSHY TEFFDVYERL LTSSNYVTRR QSLKLLSDFL LEPPNSHIMK KFILEVRYLK VIMTLLKDSS KNIQISAFHI FKIFVANPNK PQEVKIILAR
301: NHEKLLELLH DLSPGSEDDQ FEEEKELIIE EIQKLSGLKN LER

Arabidopsis Description

At5g18940 [Source:UniProtKB/TrEMBL;Acc:Q8L9L9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.