CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17728	Canola	cytosol, mitochondrion	94.71	96.41
AT5G47540.1	Thale cress	cytosol	92.94	92.13
CDY40559	Canola	cytosol	92.35	91.55
CDY28923	Canola	cytosol, mitochondrion	92.06	91.25
CDX90480	Canola	cytosol	82.35	82.6
VIT_10s0405g00020.t01	Wine grape	cytosol	82.35	82.35
KRH11537	Soybean	cytosol	80.59	82.04
CDY09635	Canola	cytosol, mitochondrion	81.76	82.01
KRH36554	Soybean	cytosol	80.59	81.79
CDY25960	Canola	cytosol	88.82	81.18
KRH01988	Soybean	endoplasmic reticulum, extracellular	78.53	80.18
Solyc05g054130.2.1	Tomato	cytosol	79.41	79.18
CDY42976	Canola	cytosol	39.71	78.95
PGSC0003DMT400034558	Potato	cytosol	78.53	78.53
KRH51169	Soybean	cytosol	18.24	78.48
PGSC0003DMT400021798	Potato	cytosol	78.53	78.3
Solyc11g012400.1.1	Tomato	cytosol	78.24	78.24
CDY41055	Canola	mitochondrion	88.82	78.04
Zm00001d021954_P003	Maize	plasma membrane	74.71	75.6
GSMUA_AchrUn_...	Banana	cytosol	38.53	75.29
Zm00001d006710_P004	Maize	mitochondrion	73.82	74.7
TraesCS2D01G197000.1	Wheat	golgi	73.82	74.48
TraesCS2B01G216100.1	Wheat	cytosol	73.82	74.48
Os07t0585100-01	Rice	plasma membrane	73.53	74.4
GSMUA_Achr1P22810_001	Banana	cytosol	73.24	74.11
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	35.29	74.07
HORVU2Hr1G036030.1	Barley	cytosol	73.24	73.89
TraesCS2A01G191000.1	Wheat	cytosol	72.94	73.59
CDY37193	Canola	cytosol	10.59	73.47
CDY42975	Canola	mitochondrion	35.0	66.85
CDY04151	Canola	cytosol	65.0	64.24
Os03t0172200-01	Rice	plasma membrane	59.41	56.42
Zm00001d027862_P002	Maize	plastid	57.65	53.12
TraesCS4A01G015400.2	Wheat	plastid	56.18	51.9
TraesCS4D01G287400.4	Wheat	plastid	55.59	51.36
TraesCS4B01G288500.2	Wheat	plastid	55.0	50.82
CDY45561	Canola	cytosol	64.71	46.41
CDY13930	Canola	cytosol	41.76	41.16
CDX92571	Canola	cytosol	41.76	41.16
OQU85418	Sorghum	cytosol	20.0	31.05

Protein Annotations

EnsemblPlants:CDX77775	EnsemblPlantsGene:GSBRNA2T00128813001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:IPR011989	InterPro:Mo25	PANTHER:PTHR10182	PANTHER:PTHR10182:SF12	PFAM:PF08569
ProteinID:CDX77775	ProteinID:CDX77775.1	SUPFAM:SSF48371	UniParc:UPI0004EF43F7	MapMan:35.1	:

Description

BnaC07g20290D

Coordinates

chrLK031812:-:1741707..1744232

Molecular Weight (calculated)

38997.9 Da

IEP (calculated)

7.132

GRAVY (calculated)

-0.304

Length

340 amino acids

Sequence
(BLAST)

001: MKGLFKSKPR TPSDLVRQTR DLFLYAHGSI SLPDSKRDEK MAELSRNIRD MKSILYGNSE AEPVAEACAQ LTQEFFRGDT LRLLITCLPK LNLETRKDAT
101: QVVANLQRQQ VNSKLIASDY LEANLDLMDL LIEGFENTDL ALHYGAMFRE CIRHQIVAKY VLESEHVKKF FDYIQLPNFD IAADAAATFK ELLTRHKSTV
201: AEFLTNNEDW FFADYNSKLL ESSNYITRRQ AIKLLGDILL DRSNSAVMTK YVSSRDNLRI LMNLLRESSK SIQIEAFHVF KLFVANQKKP ADIVNILVAN
301: RSKLLRLLAD LKPDKEDERF EADKSQVLRE IAALEPQDLA

Best Arabidopsis Sequence Match ( AT5G47540.1 )
(BLAST)

001: MKGLFKSKPR TPADLVRQTR DLLLFSDRST SLPDLRDSKR DEKMAELSRN IRDMKSILYG NSEAEPVAEA CAQLTQEFFK EDTLRLLITC LPKLNLETRK
101: DATQVVANLQ RQQVNSRLIA SDYLEANIDL MDVLIEGFEN TDMALHYGAM FRECIRHQIV AKYVLESDHV KKFFDYIQLP NFDIAADAAA TFKELLTRHK
201: STVAEFLTKN EDWFFADYNS KLLESSNYIT RRQAIKLLGD ILLDRSNSAV MTKYVSSRDN LRILMNLLRE SSKSIQIEAF HVFKLFAANQ NKPADIVNIL
301: VANRSKLLRL LADLKPDKED ERFEADKSQV LREIAALEPR DLA

Arabidopsis Description

At5g47540 [Source:UniProtKB/TrEMBL;Acc:B3LFB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.