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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:endoplasmic reticulum
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G04570.1 CDX73678 AT3G51920.1 17360592
AT4G04570.1 CDX95314 AT3G51920.1 17360592
AT4G04570.1 CDY23174 AT3G51920.1 17360592
AT4G04570.1 CDY06478 AT4G14640.1 17360592
AT4G04570.1 CDX92401 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra018496.1-P Field mustard cytosol 99.82 99.82
CDY33543 Canola cytosol 98.72 98.72
CDY21305 Canola cytosol 45.36 79.55
CDY51854 Canola plasma membrane 86.7 72.78
CDY37174 Canola plasma membrane 85.25 71.56
CDX90870 Canola cytosol 69.22 70.9
AT4G04540.1 Thale cress plasma membrane 82.15 68.44
AT4G04570.1 Thale cress plasma membrane 76.14 63.91
CDY16663 Canola plasma membrane 74.5 62.44
CDX97327 Canola plasma membrane 72.68 61.1
CDX97326 Canola plasma membrane 72.31 60.89
CDY62376 Canola plasma membrane 57.19 60.73
CDX90866 Canola plasma membrane 71.77 60.71
CDY65897 Canola plasma membrane 67.58 59.84
CDX90869 Canola plasma membrane 70.67 59.51
CDX90867 Canola plasma membrane 68.67 59.18
CDY53873 Canola plasma membrane 67.76 58.4
CDY16662 Canola plasma membrane 68.31 57.25
CDX90868 Canola plasma membrane 64.85 55.8
CDY21307 Canola plasma membrane 63.02 52.74
CDX90871 Canola plasma membrane 62.84 52.59
CDY53875 Canola plasma membrane 72.31 51.69
CDY68796 Canola plasma membrane 61.75 51.68
CDY16665 Canola plasma membrane 61.02 51.62
CDX90872 Canola plasma membrane 58.47 49.31
CDY16664 Canola plasma membrane 56.65 48.75
CDY53877 Canola plasma membrane 56.47 48.67
CDY21309 Canola plasma membrane 57.01 48.6
CDY26975 Canola cytosol, mitochondrion, plastid 13.84 43.43
CDY16698 Canola extracellular, plasma membrane 21.31 40.62
CDX94471 Canola cytosol 24.59 38.14
CDY21304 Canola plasma membrane 19.85 37.46
CDY51546 Canola plasma membrane 16.58 35.97
CDX90809 Canola mitochondrion 16.58 29.93
CDX94557 Canola plasma membrane 40.98 28.41
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.17MapMan:18.4.1.24.1Gene3D:3.30.200.20Gene3D:3.30.430.20GO:A0A078ED78
EnsemblPlants:CDX97323ProteinID:CDX97323ProteinID:CDX97323.1InterPro:GNK2InterPro:GNK2_sfGO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0005488GO:GO:0005524GO:GO:0006464
GO:GO:0006468GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016301GO:GO:0016740
GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00104393001InterPro:IPR000719InterPro:IPR002902InterPro:IPR038408InterPro:Kinase-like_dom_sf
PFAM:PF01657PFAM:PF07714ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011PFscan:PS51473
PANTHER:PTHR27002PANTHER:PTHR27002:SF348InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00220SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_domInterPro:Ser/Thr_kinase_ASTMHMM:TMhelixUniParc:UPI0004EF24D3SEG:seg:
Description
BnaA02g21140D
Coordinates
chrLK031898:-:937187..939493
Molecular Weight (calculated)
61770.8 Da
IEP (calculated)
5.213
GRAVY (calculated)
-0.234
Length
549 amino acids
Sequence
(BLAST)
001: MDSFTWDKDV EDNVSCLVRT SNSSTFGKLE LRPAIIYPSP LSIEASNNMT IFEQEWDGMV NGTVEAATDA ETSSVIKYFG AVKAEFTEFP NVYMLMQCTP
101: DITSKDCKTC LRECVTLYKN QFWGRQGGEV NRPSCFFRWD FYTFHGAFGN VTRVPAPPRP PAQEKESSAT DKKGRSTRSW VIIAIFVVLT LINILVFIGL
201: IKFFAGRRRS NNGYNIGSAE YSEADGQFML RFNLNMIMTA TDDFSSENKL GQGGFGTVHK GILPNGQEIA VKRLTKGSGQ GDTEFKNEVS LLTRLQHRNL
301: VKLLGFCSEG DEEILIYELV HNSSLDHFIF DEERRSLLTW DVRFRIIEGI ARGLLYLHED SQLKIIHRDL KASNILLDTE MNPKVADFGT ARLFDADETR
401: AETRRIAGTR GYMAPEYLNH GQISAKSDVY SFGVMLLEMI SGERNNSFEG EGLAAFAWKR WVEGKPEIII DPLLMDEPRN EIIKLIQIGL LCVQENAAKR
501: PTMSSVILWF GSETMIIPLP KAPAMTGSQC QSEDGTMSMS NVFTELSSR
Best Arabidopsis Sequence Match ( AT4G04540.1 )
(BLAST)
001: MGKYSVLMIF IASSLLIVLQ NVEIVNAVGC TGSFFNGNSS YAQNRRDLFS TLPNKVVTNG GFYNSSLGKS PNIVHAVALC GRGYEQQACI RCVDSAIQGI
101: LTTTSCLNRV DSFTWDKDEE DNVSCLVSTS NHSTFGNLEL RPSVRYQSPN SIEPSKNMTL FEQEWNAMAN RTVESATEAE TSSVLKYYSA EKAEFTEFPN
201: VYMLMQCTPD ITSQDCKTCL GECVTLFKEQ VWGRQGGEVY RPSCFFRWDL YAFHGAFDNV TRVPAPPRPQ AQGNESSITK KKGRSIGYGG IIAIVVVLTF
301: INILVFIGYI KVYGRRKESY NKINVGSAEY SDSDGQFMLR FDLGMVLAAT DEFSSENTLG QGGFGTVYKG TLLNGQEVAV KRLTKGSGQG DIEFKNEVSL
401: LTRLQHRNLV KLLGFCNEGD EQILVYEFVP NSSLDHFIFD DEKRSLLTWE MRYRIIEGIA RGLLYLHEDS QLKIIHRDLK ASNILLDAEM NPKVADFGTA
501: RLFDSDETRA ETKRIAGTRG YMAPEYLNHG QISAKSDVYS FGVMLLEMIS GERNNSFEGE GLAAFAWKRW VEGKPEIIID PFLIEKPRNE IIKLIQIGLL
601: CVQENPTKRP TMSSVIIWLG SETNIIPLPK APAFTGSRSQ SEIGAMSMSD DVFTELSCR
Arabidopsis Description
CRK39Putative cysteine-rich receptor-like protein kinase 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYS7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.