Factsheet for Bra018496.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 1
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04570.1	Bra000214.1-P	AT2G41090.1	17360592
AT4G04570.1	Bra000214.1-P	AT2G41100.1	17360592
AT4G04570.1	Bra018296.1-P	AT3G51920.1	17360592
AT4G04570.1	Bra033467.1-P	AT3G51920.1	17360592
AT4G04570.1	Bra039723.1-P	AT4G14640.1	17360592
AT4G04570.1	Bra002368.1-P	AT5G21274.1	17360592
AT4G04570.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97323	Canola	cytosol	99.82	99.82
Bra018492.1-P	Field mustard	cytosol	68.67	72.22
Bra022095.1-P	Field mustard	plasma membrane	84.88	71.25
AT4G04540.1	Thale cress	plasma membrane	81.97	68.29
AT4G04570.1	Thale cress	plasma membrane	75.96	63.76
Bra029470.1-P	Field mustard	plasma membrane	73.04	63.15
Bra029499.1-P	Field mustard	plasma membrane	74.13	62.14
Bra000797.1-P	Field mustard	plasma membrane	67.58	61.02
Bra018493.1-P	Field mustard	plasma membrane	72.13	60.74
Bra000796.1-P	Field mustard	plasma membrane	67.21	60.69
Bra017552.1-P	Field mustard	plasma membrane	68.49	58.93
Bra017551.1-P	Field mustard	plasma membrane	64.3	58.44
Bra029500.1-P	Field mustard	plasma membrane	68.12	57.19
Bra029495.1-P	Field mustard	plasma membrane	61.38	51.93
Bra000799.1-P	Field mustard	plasma membrane	61.2	51.22
Bra000800.1-P	Field mustard	plasma membrane	58.11	49.15
Bra029496.1-P	Field mustard	plasma membrane	55.56	47.88
Bra000798.1-P	Field mustard	extracellular, plasma membrane	19.13	38.18
Bra000754.1-P	Field mustard	cytosol	24.77	37.99
Bra029425.1-P	Field mustard	cytosol	13.84	35.85
Bra017549.1-P	Field mustard	extracellular	0.91	5.56

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.17	MapMan:18.4.1.24.1	Gene3D:3.30.200.20	Gene3D:3.30.430.20	EnsemblPlantsGene:Bra018496
EnsemblPlants:Bra018496.1	EnsemblPlants:Bra018496.1-P	InterPro:GNK2	InterPro:GNK2_sf	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR002902	InterPro:IPR038408
InterPro:Kinase-like_dom_sf	UniProt:M4DPQ5	PFAM:PF01657	PFAM:PF07714	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PFscan:PS51473	PANTHER:PTHR27002	PANTHER:PTHR27002:SF348	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI000254810C
SEG:seg	:	:	:	:	:

Description

AT4G04540 (E=8e-256) | protein kinase family protein

Coordinates

chrA05:+:8681416..8683599

Molecular Weight (calculated)

61743.8 Da

IEP (calculated)

5.124

GRAVY (calculated)

-0.228

Length

549 amino acids

Sequence
(BLAST)

001: MDSFTWDKDV EDNVSCLVRT SNSSTFGKLE LRPAIIYPSP LSIEASNNMT IFEQEWDGMV NGTVEAATDA ETSSVIKYFG AVKAEFTEFP NVYMLMQCTP
101: DITSKDCKTC LRECVTLYKN QFWGRQGGEV NRPSCFFRWD FYTFHGAFGN VTRVPAPPRP PAQEKESSAT DKKGRSTRSW VIIAIFVVLT LINILVFIGL
201: IKFFAGRRRS NNGYNIGSAE YSEADGQFML RFNLNMIMTA TDDFSSENKL GQGGFGTVHK GILPNGQEIA VKRLTKGSGQ GDTEFKNEVS LLTRLQHRNL
301: VKLLGFCSEG DEEILIYELV HNSSLDHFIF DEERRSLLTW DVRFRIIEGI ARGLLYLHED SQLTIIHRDL KASNILLDTE MNPKVADFGT ARLFDADETR
401: AETRRIAGTR GYMAPEYLNH GQISAKSDVY SFGVMLLEMI SGERNNSFEG EGLAAFAWKR WVEGKPEIII DPLLMDEPRN EIIKLIQIGL LCVQENAAKR
501: PTMSSVILWF GSETMIIPLP KAPAMTGSQC QSEDGTMSMS NVFTELSSR

Best Arabidopsis Sequence Match ( AT4G04540.1 )
(BLAST)

001: MGKYSVLMIF IASSLLIVLQ NVEIVNAVGC TGSFFNGNSS YAQNRRDLFS TLPNKVVTNG GFYNSSLGKS PNIVHAVALC GRGYEQQACI RCVDSAIQGI
101: LTTTSCLNRV DSFTWDKDEE DNVSCLVSTS NHSTFGNLEL RPSVRYQSPN SIEPSKNMTL FEQEWNAMAN RTVESATEAE TSSVLKYYSA EKAEFTEFPN
201: VYMLMQCTPD ITSQDCKTCL GECVTLFKEQ VWGRQGGEVY RPSCFFRWDL YAFHGAFDNV TRVPAPPRPQ AQGNESSITK KKGRSIGYGG IIAIVVVLTF
301: INILVFIGYI KVYGRRKESY NKINVGSAEY SDSDGQFMLR FDLGMVLAAT DEFSSENTLG QGGFGTVYKG TLLNGQEVAV KRLTKGSGQG DIEFKNEVSL
401: LTRLQHRNLV KLLGFCNEGD EQILVYEFVP NSSLDHFIFD DEKRSLLTWE MRYRIIEGIA RGLLYLHEDS QLKIIHRDLK ASNILLDAEM NPKVADFGTA
501: RLFDSDETRA ETKRIAGTRG YMAPEYLNHG QISAKSDVYS FGVMLLEMIS GERNNSFEGE GLAAFAWKRW VEGKPEIIID PFLIEKPRNE IIKLIQIGLL
601: CVQENPTKRP TMSSVIIWLG SETNIIPLPK APAFTGSRSQ SEIGAMSMSD DVFTELSCR

Arabidopsis Description

CRK39Putative cysteine-rich receptor-like protein kinase 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYS7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.