CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04570.1	CDX73678	AT3G51920.1	17360592
AT4G04570.1	CDX95314	AT3G51920.1	17360592
AT4G04570.1	CDY23174	AT3G51920.1	17360592
AT4G04570.1	CDY06478	AT4G14640.1	17360592
AT4G04570.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97323	Canola	cytosol	98.72	98.72
CDY21305	Canola	cytosol	45.17	79.23
CDY51854	Canola	plasma membrane	87.07	73.09
CDY37174	Canola	plasma membrane	85.61	71.87
CDX90870	Canola	cytosol	69.03	70.71
AT4G04540.1	Thale cress	plasma membrane	82.15	68.44
AT4G04570.1	Thale cress	plasma membrane	75.96	63.76
CDY16663	Canola	plasma membrane	74.32	62.29
CDX97327	Canola	plasma membrane	72.31	60.8
CDX97326	Canola	plasma membrane	71.95	60.58
CDX90866	Canola	plasma membrane	71.58	60.55
CDY62376	Canola	plasma membrane	57.01	60.54
CDY65897	Canola	plasma membrane	67.4	59.68
CDX90869	Canola	plasma membrane	70.49	59.36
CDX90867	Canola	plasma membrane	68.67	59.18
CDY53873	Canola	plasma membrane	68.12	58.71
CDY16662	Canola	plasma membrane	68.67	57.56
CDX90868	Canola	plasma membrane	64.85	55.8
CDY21307	Canola	plasma membrane	62.84	52.59
CDX90871	Canola	plasma membrane	62.66	52.44
CDY53875	Canola	plasma membrane	72.13	51.56
CDY68796	Canola	plasma membrane	61.2	51.22
CDY16665	Canola	plasma membrane	60.47	51.16
CDX90872	Canola	plasma membrane	58.65	49.46
CDY21309	Canola	plasma membrane	57.19	48.76
CDY16664	Canola	plasma membrane	56.28	48.43
CDY53877	Canola	plasma membrane	56.1	48.35
CDY26975	Canola	cytosol, mitochondrion, plastid	13.84	43.43
CDY16698	Canola	extracellular, plasma membrane	21.31	40.62
CDX94471	Canola	cytosol	24.77	38.42
CDY21304	Canola	plasma membrane	20.04	37.8
CDY51546	Canola	plasma membrane	16.58	35.97
CDX90809	Canola	mitochondrion	16.58	29.93
CDX94557	Canola	plasma membrane	41.17	28.54

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.17	MapMan:18.4.1.24.1	Gene3D:3.30.200.20	Gene3D:3.30.430.20	GO:A0A078H9P9
UniProt:A0A078H9P9	EnsemblPlants:CDY33543	ProteinID:CDY33543	ProteinID:CDY33543.1	InterPro:GNK2	InterPro:GNK2_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00054812001
InterPro:IPR000719	InterPro:IPR002902	InterPro:IPR038408	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PFAM:PF01657
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PFscan:PS51473	PANTHER:PTHR27002	PANTHER:PTHR27002:SF348
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix
UniParc:UPI0004EEE651	SEG:seg	:	:	:	:

Description

BnaC02g26130DBnaC02g26130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9P9]

Coordinates

chrLK032316:+:289027..291611

Molecular Weight (calculated)

61696.8 Da

IEP (calculated)

5.202

GRAVY (calculated)

-0.216

Length

549 amino acids

Sequence
(BLAST)

001: MDSFTWDKDV EDNVSCLVRT SNPSTFGKLE LRPAIIYPSP LGIEASNNMT IFEQEWDGMV NGTVEAATDA ETSSVIKYFG AVKAEFTEFP NVYMLMQCTP
101: DITSQDCNTC LRECVTLFKN QFWGRQGGEV NRPSCFFRWD FYTFHGAFGN VTRVPAPPRP PAQEKESSAT DKKGRSTRSW VIIAIFVVLT LINILVFIGL
201: IKFFAGRRRS NNGYNIGSAE YSEADGQFML RFNLNMIMTA TDDFSSENKL GQGGFGTVHK GILPNGQEIA VKRLTKGSGQ GDTEFKNEVS LLTRLQHRNL
301: VKLLGFCSEG DEEILIYELV HNSSLDHFIF DGERRSLLTW DVRFRIIEGI ARGLLYLHED SQLKIIHRDL KASNILLDTE MNPKVADFGT ARLFDADETR
401: AETRRIAGTR GYMAPEYLNH GQISAKSDVY SFGVMLLEMI SGERNNSFEG EGLAAFAWKR WVEGKPEIII DPLLMDEPRN EIIKLIQIGL LCVQENAAKR
501: PTMSSVILWF GSETMIIPLP KAPAMTGSQC QSEYGTMSMS NVFTELSSR

Best Arabidopsis Sequence Match ( AT4G04540.1 )
(BLAST)

001: MGKYSVLMIF IASSLLIVLQ NVEIVNAVGC TGSFFNGNSS YAQNRRDLFS TLPNKVVTNG GFYNSSLGKS PNIVHAVALC GRGYEQQACI RCVDSAIQGI
101: LTTTSCLNRV DSFTWDKDEE DNVSCLVSTS NHSTFGNLEL RPSVRYQSPN SIEPSKNMTL FEQEWNAMAN RTVESATEAE TSSVLKYYSA EKAEFTEFPN
201: VYMLMQCTPD ITSQDCKTCL GECVTLFKEQ VWGRQGGEVY RPSCFFRWDL YAFHGAFDNV TRVPAPPRPQ AQGNESSITK KKGRSIGYGG IIAIVVVLTF
301: INILVFIGYI KVYGRRKESY NKINVGSAEY SDSDGQFMLR FDLGMVLAAT DEFSSENTLG QGGFGTVYKG TLLNGQEVAV KRLTKGSGQG DIEFKNEVSL
401: LTRLQHRNLV KLLGFCNEGD EQILVYEFVP NSSLDHFIFD DEKRSLLTWE MRYRIIEGIA RGLLYLHEDS QLKIIHRDLK ASNILLDAEM NPKVADFGTA
501: RLFDSDETRA ETKRIAGTRG YMAPEYLNHG QISAKSDVYS FGVMLLEMIS GERNNSFEGE GLAAFAWKRW VEGKPEIIID PFLIEKPRNE IIKLIQIGLL
601: CVQENPTKRP TMSSVIIWLG SETNIIPLPK APAFTGSRSQ SEIGAMSMSD DVFTELSCR

Arabidopsis Description

CRK39Putative cysteine-rich receptor-like protein kinase 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYS7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.