CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX95314
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04100.1	CDX73678	AT3G51920.1	17360592
AT3G04100.1	CDX95314	AT3G51920.1	17360592
AT3G04100.1	CDY23174	AT3G51920.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50884	Canola	nucleus	91.71	91.71
CDY71265	Canola	nucleus	49.22	50.8
CDY21138	Canola	nucleus	43.52	48.28
CDX81208	Canola	nucleus	49.22	47.26
AT3G04100.1	Thale cress	nucleus	46.63	43.48
CDY60053	Canola	nucleus	41.97	42.63

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078HWS4	UniProt:A0A078HWS4	EnsemblPlants:CDY42905	ProteinID:CDY42905
ProteinID:CDY42905.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00075636001	InterPro:IPR002100	InterPro:IPR036879	PFAM:PF00319	PRINTS:PR00404
PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF185	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI0004EB9882	SEG:seg	:	:	:

Description

BnaC05g47460DBnaC05g47460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWS4]

Coordinates

chrLK032538:+:79629..80210

Molecular Weight (calculated)

22291.0 Da

IEP (calculated)

9.583

GRAVY (calculated)

-0.660

Length

193 amino acids

Sequence
(BLAST)

001: MKFTKGKQKI EMKKVGAYAA RMIMFSKRKS GLFKKMNEIV SLCNVETSFL VFSDSGKPYT FAYPSLKEAV GQFKNPLRDE PSATINTGPL VEAYRRQKNQ
101: DLMERYMDLV EELEIKNEKE RILKKIIKEN KEKILWNIPP AEGLSVEEKK WMRQTFVDLH VYLGDMALKC FGNDGDRSSS SQESYGRDGE TYA

Best Arabidopsis Sequence Match ( AT3G04100.1 )
(BLAST)

001: MSSTKQAKGR KTKGKQKIEM KKVENYGDRM ITFSKRKTGI FKKMNELVAM CDVEVAFLIF SQPKKPYTFA HPSMKKVADR LKNPSRQEPL ERDDTRPLVE
101: AYKKRRLHDL VKKMEALEEE LAMDLEKLKL LKESRNEKKL DKMWWNFPSE GLSAKELQQR YQAMLELRDN LCDNMAHLRL GKDCGGSSSV RVGRRVSGGV
201: RLFDREA

Arabidopsis Description

AGL57AGAMOUS-like 57 [Source:UniProtKB/TrEMBL;Acc:Q9M8W6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.