CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX95314
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04100.1	CDX73678	AT3G51920.1	17360592
AT3G04100.1	CDX95314	AT3G51920.1	17360592
AT3G04100.1	CDY23174	AT3G51920.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60053	Canola	nucleus	85.07	90.0
CDY71265	Canola	nucleus	56.22	60.43
CDY21138	Canola	nucleus	49.75	57.47
CDY50884	Canola	nucleus	49.75	51.81
CDY42905	Canola	nucleus	47.26	49.22
AT3G04100.1	Thale cress	nucleus	47.26	45.89

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078D1J3	EnsemblPlants:CDX81208	ProteinID:CDX81208	ProteinID:CDX81208.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00134672001	InterPro:IPR002100	InterPro:IPR036879	PFAM:PF00319	PRINTS:PR00404
PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF185	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI0004EE8888	SEG:seg	:	:	:

Description

BnaC09g06190D

Coordinates

chrLK031824:+:116193..116798

Molecular Weight (calculated)

22501.9 Da

IEP (calculated)

9.532

GRAVY (calculated)

-0.860

Length

201 amino acids

Sequence
(BLAST)

001: MKRTKGKQKI EMKKVESYEA RRTTFSKRKA GILKKMNEII AVCDVEASFL VFSESGYPRT FAHPSMEDAV DRVKCSLGHE PSGKDDASIG SLVEAYKRQK
101: NEELKKKLCD LAEELKMVKE KEKKMVEKKK IKESKNEWSN ILNEGVNKDE LKRVHQAFVE LNYSLSGKAL QRLGKDGDGS SSALAERGHC DGGEAGAGEQ
201: T

Best Arabidopsis Sequence Match ( AT3G04100.1 )
(BLAST)

001: MSSTKQAKGR KTKGKQKIEM KKVENYGDRM ITFSKRKTGI FKKMNELVAM CDVEVAFLIF SQPKKPYTFA HPSMKKVADR LKNPSRQEPL ERDDTRPLVE
101: AYKKRRLHDL VKKMEALEEE LAMDLEKLKL LKESRNEKKL DKMWWNFPSE GLSAKELQQR YQAMLELRDN LCDNMAHLRL GKDCGGSSSV RVGRRVSGGV
201: RLFDREA

Arabidopsis Description

AGL57AGAMOUS-like 57 [Source:UniProtKB/TrEMBL;Acc:Q9M8W6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.