CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX95314
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04100.1	CDX73678	AT3G51920.1	17360592
AT3G04100.1	CDX95314	AT3G51920.1	17360592
AT3G04100.1	CDY23174	AT3G51920.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031945.1-P	Field mustard	nucleus	100.0	100.0
CDY42905	Canola	nucleus	91.71	91.71
CDY71265	Canola	nucleus	49.74	51.34
CDX81208	Canola	nucleus	51.81	49.75
CDY21138	Canola	nucleus	44.56	49.43
CDY60053	Canola	nucleus	45.08	45.79
AT3G04100.1	Thale cress	nucleus	48.7	45.41

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078IN90	UniProt:A0A078IN90	EnsemblPlants:CDY50884	ProteinID:CDY50884
ProteinID:CDY50884.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00097714001	InterPro:IPR002100	InterPro:IPR036879	PFAM:PF00319	PRINTS:PR00404
PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF185	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI000254652C	SEG:seg	:	:	:

Description

BnaA05g37450DBnaA05g37450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IN90]

Coordinates

chrLK032945:+:95842..96423

Molecular Weight (calculated)

22173.7 Da

IEP (calculated)

9.666

GRAVY (calculated)

-0.679

Length

193 amino acids

Sequence
(BLAST)

001: MRSTKGKQKI EMKKVGAYAA RKITFSKRKS GLFKKMNEIV SLCNVETSFL VFSDSGKPYT FAYPSLEEAV GQFKNPLRHE PSATINTRPL VEAYKRQKNQ
101: DLMERYMDLV EELEINNEKE KILKKIIKEN KEKILWNIPP AECLSVEEKK WMRQTFVGLH VFLSDMALKC FGNDGDGSSS SQESRGRDGE TYA

Best Arabidopsis Sequence Match ( AT3G04100.1 )
(BLAST)

001: MSSTKQAKGR KTKGKQKIEM KKVENYGDRM ITFSKRKTGI FKKMNELVAM CDVEVAFLIF SQPKKPYTFA HPSMKKVADR LKNPSRQEPL ERDDTRPLVE
101: AYKKRRLHDL VKKMEALEEE LAMDLEKLKL LKESRNEKKL DKMWWNFPSE GLSAKELQQR YQAMLELRDN LCDNMAHLRL GKDCGGSSSV RVGRRVSGGV
201: RLFDREA

Arabidopsis Description

AGL57AGAMOUS-like 57 [Source:UniProtKB/TrEMBL;Acc:Q9M8W6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.